Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SeD_A0542 |
Symbol | ushA |
ID | 6871729 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 |
Kingdom | Bacteria |
Replicon accession | NC_011205 |
Strand | + |
Start bp | 557067 |
End bp | 558719 |
Gene Length | 1653 bp |
Protein Length | 550 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 642783763 |
Product | bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor |
Protein accession | YP_002214450 |
Protein GI | 198244120 |
COG category | [F] Nucleotide transport and metabolism |
COG ID | [COG0737] 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.103299 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 80 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAAATTTT TGAAACGGGG TGTGGCGCTG GCGTTACTGG CGGCGTTCGC GCTGACGACT CAGCCTGCAC AGGCTTACGA AAAAGATAAA ACCTATAAAA TTACTATCCT GCATACCAAC GATCACCACG GTCACTTCTG GCGCAGCGAA TATGGCGAAT ATGGTCTGGC GGCGCAAAAA ACGCTGGTGG ACAGTATCCG TAAAGAGGTG GCGCAAGAGG GGGGAAGCGT CCTGTTGTTA TCCGGCGGCG ACATTAATAC CGGGGTGCCG GAATCCGATC TCCAAGATGC GGAGCCCGAT TTCCGCGGGA TGAATCTGAT TGTCTACGAC GCTATGGCCG TCGGTAATCA TGAATTTGAT AATCCGCTCA CCGTATTGCG CCAGCAGGAA AAGTGGGCGA AGTTTCCCTT TCTTTCCGCC AATATTTATC AAAAAAGTAC CGGCGAGCGT CTGTTTAAGC CGTGGGCTAT TTTTACACGC CAGGATATAA AAATCGCGGT AATCGGCTTA ACCACCGATG ACACGGCGAA AATAGGCAAC CCGGAATATT TCACCGATAT TGAGTTTCGT AAACCTGCTG AAGAAGCAAA GGTGGTGATT CAGGAACTTA ATATGAATGA AAAACCGGAC GTGATTATCG CGACCACGCA TATGGGACAT TATGACAACG GCGATCACGG TTCGAACGCG CCGGGCGACG TTGAGATGGC GCGTAGCCTG CCTGCCGGTT CGCTGGCGAT GATTGTGGGC GGTCACTCAC AAGACCCGGT ATGTATGGCG TCGGAAAATA AAAAACAGGT GAATTACGTA CCGGGAACGC CCTGCGCGCC GGATAAGCAA AATGGTATCT GGATCGTGCA GGCGCATGAG TGGGGTAAAT ATGTGGGCCG CGCGGATTTC GAATTCCGTA ACGGCGAGAT GAAAATGGTT AACTACCAGC TTATTCCGGT AAATCTCAAG AAAAAAGTGA CCTGGGATAA CGGGAAAAAC GAGCGTGTAC TTTACACGCC GGAAATCGCC GAAAATCCGC AAATGCTCTC GTTATTAACG CCGTTCCAGA ATAAAGGTAA AGCGCAACTG GAGGTGAAAA TTGGTAGCGT GAATGGCCTT CTTGAAGGCG ATCGCAGTAA GGTCAGATTT GTCCAGACCA ATATGGGACG GGTGATTCTG GCTGCGCAGA TCGCGCGCAC CGGCGCCGAT TTTGGCGTGA TGAGCGGCGG CGGTATTCGC GACTCGATTG AGGCGGGAGA TATTACCTAT AAAAGCGTGC TCAAGGTACA GCCGTTCGGC AACATTGTGG TGTATGCCGA TATGAGCGGC AAAGAGGTAG TTGATTATCT CACCGCCGTA GCACAGATGA AACCGGACTC CGGCGCCTAT CCACAGTTCG CCAATGTGAG CTTTGTCGCC AAAGAGGGCA AGCTCACCGA TCTGAAAATC AAAGGCGAGC CTGTTGATCC GGCTAAAACC TATCGCATGG CGACGCTGAG TTTCAACGCC ACGGGCGGCG ATGGTTATCC GCGCATCGAT AACAAACCGG GATACGTGAA TACCGGGTTT ATTGACGCGG AAGTGCTGAA AGAGTTTATT CAGCAAAATT CACCGCTGGA TGCGGCGGCG TTTACGCCAA AAGGCGAGGT GAGCTGGCTG TAG
|
Protein sequence | MKFLKRGVAL ALLAAFALTT QPAQAYEKDK TYKITILHTN DHHGHFWRSE YGEYGLAAQK TLVDSIRKEV AQEGGSVLLL SGGDINTGVP ESDLQDAEPD FRGMNLIVYD AMAVGNHEFD NPLTVLRQQE KWAKFPFLSA NIYQKSTGER LFKPWAIFTR QDIKIAVIGL TTDDTAKIGN PEYFTDIEFR KPAEEAKVVI QELNMNEKPD VIIATTHMGH YDNGDHGSNA PGDVEMARSL PAGSLAMIVG GHSQDPVCMA SENKKQVNYV PGTPCAPDKQ NGIWIVQAHE WGKYVGRADF EFRNGEMKMV NYQLIPVNLK KKVTWDNGKN ERVLYTPEIA ENPQMLSLLT PFQNKGKAQL EVKIGSVNGL LEGDRSKVRF VQTNMGRVIL AAQIARTGAD FGVMSGGGIR DSIEAGDITY KSVLKVQPFG NIVVYADMSG KEVVDYLTAV AQMKPDSGAY PQFANVSFVA KEGKLTDLKI KGEPVDPAKT YRMATLSFNA TGGDGYPRID NKPGYVNTGF IDAEVLKEFI QQNSPLDAAA FTPKGEVSWL
|
| |