Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SeD_A0494 |
Symbol | ppiD |
ID | 6875676 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 |
Kingdom | Bacteria |
Replicon accession | NC_011205 |
Strand | + |
Start bp | 511981 |
End bp | 513852 |
Gene Length | 1872 bp |
Protein Length | 623 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 642783719 |
Product | peptidyl-prolyl cis-trans isomerase (rotamase D) |
Protein accession | YP_002214406 |
Protein GI | 198244647 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG0760] Parvulin-like peptidyl-prolyl isomerase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 71 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATGGACA GCTTACGCAC GGCTGCAAAC AGTCTCGTGC TCAAGATTAT TTTCGTTATC ATTATCGTGT CGTTCATTTT GACCGGCGTT AGTGGTTACC TGATTGGCGG AAGCAATAAC TACGCCGCAA AAGTGAATGG CCAGGGAATC AGCCGGGCAC AGTTTGAGAA TGCGTTTAAC AACGAACGTA ACCGTATGCA GCAGCAGTTG GGCGACAGGT ATTCTGAACT GGCGGCCAAC GAAGGTTATA TGAAAAGCCT GCGCCAGCAG GTGCTGAATC GTCTGATAGA TGAAGCGCTG TTGGATCAAT ATTCCCGCGA ACTGAAACTG GGCATCAGCG ATGAGCAGGT AAAACAGGCG ATTTTCGCCA CTCCCGCTTT TCAGGTGGAC GGTAAGTTTG ACAACAACCG CTATAACGCG ATTGTGAATC AGATGGGAAT GACCGCCGAT CAGTACGCTC AGGCGCTGCG TAACCAGCTT ACCACTCAGC AACTGATCAA CGGCGTGGCC GGTACTGATT TTATGCTGAA AGGGGAAACC GACGAACTGG CGGCATTAGT CTCTCAACAG CGCGTGGTGC GTGAAGCCGT TATTGATGTC AACGCGCTGG CGGCGAAGCA GCAGGTGACC GATCAGGAAG TGTCCAGCTA CTACGATCAG AATAAAGTCC GCTTTATGAC GCCGGAACAG TTCCGCGTAA GCTATATCAA GCTGGATGCC GCGACGATGC AGGCACCGGT CAGCGATGCG GATATTCAGG CCTATTATGA CCAGCATGTA GATCAGTTTA CTCAGCCGGA GCGCATTCGT TACAGCATTA TTCAGACCAA AACGGAAGAT GATGCGAAAG CGGTACTGGA TGCGCTGAAC AAGGGCGAAG ATTTCGCCAC GCTGGCGAAA GAGAAATCTA CCGATATCAT CTCTGCGCGT AATGGCGGCG ATATGGGCTG GCTGGAAGAG TCTGCCACGG TGCCGGAACT GAAAAACGCC GGATTAAAAG AAAAAGGCCA GATATCTGGC GTGATTAAGT CGTCTGTCGG TTTTCTGGTG GCGCGTCTGG ATGATATTCA GCCTGCCAAA GTGAAACCGT TAAGCGAGGT TCGCGACGAC ATTGCCGCGA AAGTGAAACA GGAAAAAGCG CTGGATGCTT ACTATGCGTT GCAGCAGAAA GTGAGCGATG CGGCAAGCAA CGACAATGAG TCGTTAGCAG GCGCTGAACA GGTCGCTGGC GTAAAAGCCG TTGAAACCGG CTGGTTTAGC CGTGACACCT TACCGGAAGA GCTGAACTTC AAACCGGTAG CCGATGCTAT CTTTAATGGC GGTCTGGTAG GCGAAAACGG TACGCCGGGG CCGAATTCAG ACATTATCAC CGTAGATGGC GACCGGGCTT TTGTTGTGCG CGTGAGCGAA CATAAACCTG AAGCCGTGAA GCCGTTGGCA GAAGTGAAAG AACAGGTCAC TGCCCTGGTG AAGCATAATA AAGCGGAACA ACAGGCGAAG CTGGATGCGG AAAAACTGCT GGTCGAGCTG AAAGCGGGCA AAGGCGCGGA AGCGATGAAA GCGGCGGGGC TGAGTTTTGG CGAGCCTAAA ACGTTAAGTC GTACCAGTCA GGATCCGGTG AGTCAGGCGG CCTTTGCGTT AAGCCTTCCG ACGAAAGATA AGCCAGTTTA TGGCGTGGCG AACGATATGC AGGGTAACGT CGTTCTGCTG GCGTTTGACG AGGTGAAAGC GGGCGCCATG CCGGAAGCGC AGAAAAAAGC GATGGTGCAG GGCATCACGC AGAACAATGC GCAAATTGTC TTTGAGGCGC TGATGAGCAA TCTGCGTAAA GAGGCGAAAA TCAAAATCGG CGACGCTCTG GAACAGCAGT AA
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Protein sequence | MMDSLRTAAN SLVLKIIFVI IIVSFILTGV SGYLIGGSNN YAAKVNGQGI SRAQFENAFN NERNRMQQQL GDRYSELAAN EGYMKSLRQQ VLNRLIDEAL LDQYSRELKL GISDEQVKQA IFATPAFQVD GKFDNNRYNA IVNQMGMTAD QYAQALRNQL TTQQLINGVA GTDFMLKGET DELAALVSQQ RVVREAVIDV NALAAKQQVT DQEVSSYYDQ NKVRFMTPEQ FRVSYIKLDA ATMQAPVSDA DIQAYYDQHV DQFTQPERIR YSIIQTKTED DAKAVLDALN KGEDFATLAK EKSTDIISAR NGGDMGWLEE SATVPELKNA GLKEKGQISG VIKSSVGFLV ARLDDIQPAK VKPLSEVRDD IAAKVKQEKA LDAYYALQQK VSDAASNDNE SLAGAEQVAG VKAVETGWFS RDTLPEELNF KPVADAIFNG GLVGENGTPG PNSDIITVDG DRAFVVRVSE HKPEAVKPLA EVKEQVTALV KHNKAEQQAK LDAEKLLVEL KAGKGAEAMK AAGLSFGEPK TLSRTSQDPV SQAAFALSLP TKDKPVYGVA NDMQGNVVLL AFDEVKAGAM PEAQKKAMVQ GITQNNAQIV FEALMSNLRK EAKIKIGDAL EQQ
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