Gene SeD_A0494 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeD_A0494 
SymbolppiD 
ID6875676 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Dublin str. CT_02021853 
KingdomBacteria 
Replicon accessionNC_011205 
Strand
Start bp511981 
End bp513852 
Gene Length1872 bp 
Protein Length623 aa 
Translation table11 
GC content52% 
IMG OID642783719 
Productpeptidyl-prolyl cis-trans isomerase (rotamase D) 
Protein accessionYP_002214406 
Protein GI198244647 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG0760] Parvulin-like peptidyl-prolyl isomerase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones71 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATGGACA GCTTACGCAC GGCTGCAAAC AGTCTCGTGC TCAAGATTAT TTTCGTTATC 
ATTATCGTGT CGTTCATTTT GACCGGCGTT AGTGGTTACC TGATTGGCGG AAGCAATAAC
TACGCCGCAA AAGTGAATGG CCAGGGAATC AGCCGGGCAC AGTTTGAGAA TGCGTTTAAC
AACGAACGTA ACCGTATGCA GCAGCAGTTG GGCGACAGGT ATTCTGAACT GGCGGCCAAC
GAAGGTTATA TGAAAAGCCT GCGCCAGCAG GTGCTGAATC GTCTGATAGA TGAAGCGCTG
TTGGATCAAT ATTCCCGCGA ACTGAAACTG GGCATCAGCG ATGAGCAGGT AAAACAGGCG
ATTTTCGCCA CTCCCGCTTT TCAGGTGGAC GGTAAGTTTG ACAACAACCG CTATAACGCG
ATTGTGAATC AGATGGGAAT GACCGCCGAT CAGTACGCTC AGGCGCTGCG TAACCAGCTT
ACCACTCAGC AACTGATCAA CGGCGTGGCC GGTACTGATT TTATGCTGAA AGGGGAAACC
GACGAACTGG CGGCATTAGT CTCTCAACAG CGCGTGGTGC GTGAAGCCGT TATTGATGTC
AACGCGCTGG CGGCGAAGCA GCAGGTGACC GATCAGGAAG TGTCCAGCTA CTACGATCAG
AATAAAGTCC GCTTTATGAC GCCGGAACAG TTCCGCGTAA GCTATATCAA GCTGGATGCC
GCGACGATGC AGGCACCGGT CAGCGATGCG GATATTCAGG CCTATTATGA CCAGCATGTA
GATCAGTTTA CTCAGCCGGA GCGCATTCGT TACAGCATTA TTCAGACCAA AACGGAAGAT
GATGCGAAAG CGGTACTGGA TGCGCTGAAC AAGGGCGAAG ATTTCGCCAC GCTGGCGAAA
GAGAAATCTA CCGATATCAT CTCTGCGCGT AATGGCGGCG ATATGGGCTG GCTGGAAGAG
TCTGCCACGG TGCCGGAACT GAAAAACGCC GGATTAAAAG AAAAAGGCCA GATATCTGGC
GTGATTAAGT CGTCTGTCGG TTTTCTGGTG GCGCGTCTGG ATGATATTCA GCCTGCCAAA
GTGAAACCGT TAAGCGAGGT TCGCGACGAC ATTGCCGCGA AAGTGAAACA GGAAAAAGCG
CTGGATGCTT ACTATGCGTT GCAGCAGAAA GTGAGCGATG CGGCAAGCAA CGACAATGAG
TCGTTAGCAG GCGCTGAACA GGTCGCTGGC GTAAAAGCCG TTGAAACCGG CTGGTTTAGC
CGTGACACCT TACCGGAAGA GCTGAACTTC AAACCGGTAG CCGATGCTAT CTTTAATGGC
GGTCTGGTAG GCGAAAACGG TACGCCGGGG CCGAATTCAG ACATTATCAC CGTAGATGGC
GACCGGGCTT TTGTTGTGCG CGTGAGCGAA CATAAACCTG AAGCCGTGAA GCCGTTGGCA
GAAGTGAAAG AACAGGTCAC TGCCCTGGTG AAGCATAATA AAGCGGAACA ACAGGCGAAG
CTGGATGCGG AAAAACTGCT GGTCGAGCTG AAAGCGGGCA AAGGCGCGGA AGCGATGAAA
GCGGCGGGGC TGAGTTTTGG CGAGCCTAAA ACGTTAAGTC GTACCAGTCA GGATCCGGTG
AGTCAGGCGG CCTTTGCGTT AAGCCTTCCG ACGAAAGATA AGCCAGTTTA TGGCGTGGCG
AACGATATGC AGGGTAACGT CGTTCTGCTG GCGTTTGACG AGGTGAAAGC GGGCGCCATG
CCGGAAGCGC AGAAAAAAGC GATGGTGCAG GGCATCACGC AGAACAATGC GCAAATTGTC
TTTGAGGCGC TGATGAGCAA TCTGCGTAAA GAGGCGAAAA TCAAAATCGG CGACGCTCTG
GAACAGCAGT AA
 
Protein sequence
MMDSLRTAAN SLVLKIIFVI IIVSFILTGV SGYLIGGSNN YAAKVNGQGI SRAQFENAFN 
NERNRMQQQL GDRYSELAAN EGYMKSLRQQ VLNRLIDEAL LDQYSRELKL GISDEQVKQA
IFATPAFQVD GKFDNNRYNA IVNQMGMTAD QYAQALRNQL TTQQLINGVA GTDFMLKGET
DELAALVSQQ RVVREAVIDV NALAAKQQVT DQEVSSYYDQ NKVRFMTPEQ FRVSYIKLDA
ATMQAPVSDA DIQAYYDQHV DQFTQPERIR YSIIQTKTED DAKAVLDALN KGEDFATLAK
EKSTDIISAR NGGDMGWLEE SATVPELKNA GLKEKGQISG VIKSSVGFLV ARLDDIQPAK
VKPLSEVRDD IAAKVKQEKA LDAYYALQQK VSDAASNDNE SLAGAEQVAG VKAVETGWFS
RDTLPEELNF KPVADAIFNG GLVGENGTPG PNSDIITVDG DRAFVVRVSE HKPEAVKPLA
EVKEQVTALV KHNKAEQQAK LDAEKLLVEL KAGKGAEAMK AAGLSFGEPK TLSRTSQDPV
SQAAFALSLP TKDKPVYGVA NDMQGNVVLL AFDEVKAGAM PEAQKKAMVQ GITQNNAQIV
FEALMSNLRK EAKIKIGDAL EQQ