Gene SeD_A0479 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeD_A0479 
Symbol 
ID6873559 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Dublin str. CT_02021853 
KingdomBacteria 
Replicon accessionNC_011205 
Strand+ 
Start bp495091 
End bp496584 
Gene Length1494 bp 
Protein Length497 aa 
Translation table11 
GC content40% 
IMG OID642783705 
Producttetratricopeptide repeat protein 
Protein accessionYP_002214392 
Protein GI198242362 
COG category[R] General function prediction only 
COG ID[COG0790] FOG: TPR repeat, SEL1 subfamily 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones8 
Plasmid unclonability p-value0.786454 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones75 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATAAAAC GGAAATGGAG TATTTTGTTT CTGCTTGGGC TTTCTTTCGC ATCGGTATGT 
CAGGCAGGTG GTGATATTGA CGCGTTGTAT AGCCGTATTG CGCAGAAAGA TATTCAGGCG 
CTAAATGAGC TAAAAGCGTT AGCCAAAGAT AATAATGCTC AAGCGCTGGC GGAGTTGGGG 
TTTATTTATG AGTACGGTGT TTCAGTATCT GTGGATATTC CGCAAGCAAT AAAGTACTAC 
GAGCAGGCTT GTGATTTGGA CGGTGATTAT GGTTGCTTTA ATGCAGCTTA TTTCTATGAA 
TATGGCATCG GTACCCAAAA GGACATTACG CAAGCGAAAA CATTAGCAAA ACAGCTTAGA 
GAAAAAATTA ATCTACCCAA TATCAATCTC GATAAAAAGG TGAGTGAACG TATAATTGGG 
AGTGTTTATA GTAATAAACT TGAGGCATAT AGAGACCTTT CATTTCGTCC TCATTTTATT 
CAAGGCTTAA GTTTCTATTT TTATGCCCCG CAATCAGATG AGCGAAAACT GCTGAGTCGA 
ATAGGTTTTG ACTCATCACA TCTTGCGCGG ATAGCGATAC TCTGGGCGAG AGAGGGTGAT 
CCTGAGGTCG CGTATCAGAC GGCAAAACTG GTCTCTACTT TGTATTTTAA TAATGAAACG 
AAAACGATAG ATATTGCTGA AGCGCTGAAA TGGCTCCGAA TTTCGGCCGA GAAGGGGGAT 
GCCGACTCAC AGACGCTGTT AGGTTTTCTT TATGAACACG CTGGATTGGG ATTACAACCA 
GATGGAGAGA AAGCCAGGAA ATGGTATGAA ATGGCGGCGC AGCAAGGTAA TGGAGAAGCA 
TTGTATACGT TAGGTCGTAT GTACTATTCT GGCGTAATGG TTAACGTTGA TTACGATAAA 
GCGCTGTATT TTTTTAAAAA AGCTTATGAG AAAGAATTAC AGGCGGCCGC TGATTATTTA 
GCACAGATGT ATTTTAATGG CCAGAGTGTA GATGTCGATT GCCAACAATC CTGGCACTAT 
TACGATAACA GCTATATAAA AAAGATGACA CAACGCGATT ATCTTGATTA TTGTGAAAAA 
GATCGAAAGC GCCGTAATGA TTTTAGTCAG CAACTTCCTG AGCTGACATT AGAAAAATAT 
GCGGGATTAT TTGGCAGGAT TGATAATATT CCTCTGTGTC AGATTGGATT TGTTGTCAAT 
ACGAATAAGT TAATTCATGT TGCGAACTTA CGTGTGGAAT TGATATTAAA AAATGATGCT 
GGAGTTAGTG ACGAAAGAAT AGTCGCTTTT CCTCCTTTGG GTCTCAATAC TCTGGGTGCT 
GAACAGGGTA TGGGGGATTC TTTTAAGTCG ATGGGATATC TCTTGATGAA AAACGGTGAC 
TTGTGTGATT ACCATAAACT TACTTTCACC GTGAAGTCAG CGACGGCAAC AATCAATGGT 
AAAAAAGTTG ATTTACTGAA AACGGATAAT TTACATATTA TTCAGAATCG ATAA
 
Protein sequence
MIKRKWSILF LLGLSFASVC QAGGDIDALY SRIAQKDIQA LNELKALAKD NNAQALAELG 
FIYEYGVSVS VDIPQAIKYY EQACDLDGDY GCFNAAYFYE YGIGTQKDIT QAKTLAKQLR 
EKINLPNINL DKKVSERIIG SVYSNKLEAY RDLSFRPHFI QGLSFYFYAP QSDERKLLSR 
IGFDSSHLAR IAILWAREGD PEVAYQTAKL VSTLYFNNET KTIDIAEALK WLRISAEKGD 
ADSQTLLGFL YEHAGLGLQP DGEKARKWYE MAAQQGNGEA LYTLGRMYYS GVMVNVDYDK 
ALYFFKKAYE KELQAAADYL AQMYFNGQSV DVDCQQSWHY YDNSYIKKMT QRDYLDYCEK 
DRKRRNDFSQ QLPELTLEKY AGLFGRIDNI PLCQIGFVVN TNKLIHVANL RVELILKNDA 
GVSDERIVAF PPLGLNTLGA EQGMGDSFKS MGYLLMKNGD LCDYHKLTFT VKSATATING 
KKVDLLKTDN LHIIQNR