Gene SeD_A0463 details

Gene Information

• Locus tag: SeD_A0463
• Symbol: dxs
• ID: 6873878
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853
• Kingdom: Bacteria
• Replicon accession: NC_011205
• Strand: -
• Start bp: 477954
• End bp: 479816
• Gene Length: 1863 bp
• Protein Length: 620 aa
• Translation table: 11
• GC content: 56%
• IMG OID: 642783689
• Product: 1-deoxy-D-xylulose-5-phosphate synthase
• Protein accession: YP_002214376
• Protein GI: 198245605
• COG category: [H] Coenzyme transport and metabolism; [I] Lipid transport and metabolism
• COG ID: [COG1154] Deoxyxylulose-5-phosphate synthase
• TIGRFAM ID: [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase

Plasmid Coverage information

• Num covering plasmid clones: 10
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 95
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGAGTTTTG ATATAGCCAA ATACCCTACC CTGGCATTGG TCGACTCCAC CCAGGAGTTA 
CGACTGTTAC CGAAAGAGAG TCTGCCGAAA CTCTGCGACG AGCTACGCCG CTACTTACTC 
GACAGCGTAA GCCGTTCCAG CGGGCATTTC GCTTCCGGGC TGGGCACGGT AGAACTTACC 
GTGGCGCTGC ATTATGTCTA CAACACCCCG TTTGACCAGC TAATCTGGGA TGTTGGACAC 
CAGGCTTATC CACATAAAAT CCTTACCGGT CGTCGCGACA AAATCGGCAC CATTCGCCAG 
AAAGGCGGTC TGCACCCGTT CCCGTGGCGC GGAGAAAGCG AATACGATGT GCTGAGCGTT 
GGGCATTCCT CCACCTCCAT CAGCGCCGGT ATCGGTATTG CCGTGGCGGC GGAGAAAGAA 
GGCAAAGATC GCCGCACCGT CTGTGTGATT GGCGACGGCG CCATCACCGC CGGTATGGCG 
TTTGAAGCAA TGAATCACGC AGGCGATATC CGGCCCGACA TGCTGGTCAT TCTGAACGAC 
AATGAAATGT CGATTTCGGA AAACGTCGGC GCGCTCAACA ACCATCTGGC GCAGCTACTT 
TCCGGTAAGC TTTACTCTTC TCTGCGCGAA GGCGGAAAAA AGGTCTTCTC CGGCGTACCG 
CCAATTAAAG AACTGCTCAA GCGTACCGAA GAACATATTA AAGGCATGGT TGTGCCGGGC 
ACACTGTTCG AAGAGCTGGG CTTTAACTAC ATCGGGCCGG TCGATGGTCA CGATGTCATG 
GGGCTTATCA GCACATTGAA GAACATGCGC GACCTGAAAG GGCCGCAGTT CCTGCATATC 
ATGACCAAGA AAGGCCGCGG CTATGAGCCC GCGGAAAAAG ATCCGATCAC TTTCCATGCG 
GTGCCTAAAT TTGATCCCTC CAGCGGATGT TTGCCGAAAA GCAGCGGCGG TCTGCCCGGT 
TATTCAAAAA TCTTCGGTGA CTGGCTGTGT GAAACCGCCG CCAAAGACAG CAAGCTGATG 
GCGATCACCC CGGCAATGCG CGAAGGTTCC GGCATGGTGG AATTTTCACG TAAATTCCCG 
GATCGCTATT TTGACGTCGC CATCGCCGAG CAGCATGCCG TCACCTTCGC CGCAGGTCTG 
GCGATTGGCG GCTATAAGCC CGTCGTGGCG ATCTACTCTA CTTTCCTGCA ACGCGCCTAC 
GATCAGGTCA TCCATGACGT CGCTATCCAG AAACTGCCGG TCATGTTCGC CATCGATCGC 
GCCGGTATCG TTGGCGCGGA TGGACAAACA CACCAGGGCG CGTTCGATCT CTCCTATCTG 
CGCTGCATCC CGGATATGGT GATCATGACG CCAAGCGACG AAAACGAATG TCGCCAGATG 
TTATTTACCG GGTATCACTA TAACGACGGC CCGACGGCAG TACGTTATCC ACGCGGTAAT 
GCGCAGGGCG TGGCGCTAAC CCCGCTGGAA AAACTGCCTA TTGGTAAAGG CCTTGTGAAG 
CGTCATGGCG AAAAACTGGC GATTCTGAAC TTTGGCACCT TAATGCCTGA GGCGGCGAAA 
GTCGCCGAAG CGCTGAACGC CACGCTGGTC GACATGCGCT TTGTTAAGCC GCTGGACGAC 
ACGTTAATTC TGGAGATGGC CGCGCAGCAT GACGCGCTGG TGACGCTGGA AGAAAACGCC 
ATTATGGGCG GCGCTGGCAG CGGCGTAAAC GAAGTGCTAA TGGCCCATCG TAAACCTGTA 
CCTGTGCTGA ATATCGGTCT TCCGGATTTC TTTATCCCGC AAGGAACGCA GGAAGAAGCC 
CGCGCGGAAC TGGGGCTTGA CGCCGCAGGC ATTGAAGCCA AAATCAAGGC CTGGCTGGCA 
TAA 

 

Protein sequence

MSFDIAKYPT LALVDSTQEL RLLPKESLPK LCDELRRYLL DSVSRSSGHF ASGLGTVELT 
VALHYVYNTP FDQLIWDVGH QAYPHKILTG RRDKIGTIRQ KGGLHPFPWR GESEYDVLSV 
GHSSTSISAG IGIAVAAEKE GKDRRTVCVI GDGAITAGMA FEAMNHAGDI RPDMLVILND 
NEMSISENVG ALNNHLAQLL SGKLYSSLRE GGKKVFSGVP PIKELLKRTE EHIKGMVVPG 
TLFEELGFNY IGPVDGHDVM GLISTLKNMR DLKGPQFLHI MTKKGRGYEP AEKDPITFHA 
VPKFDPSSGC LPKSSGGLPG YSKIFGDWLC ETAAKDSKLM AITPAMREGS GMVEFSRKFP 
DRYFDVAIAE QHAVTFAAGL AIGGYKPVVA IYSTFLQRAY DQVIHDVAIQ KLPVMFAIDR 
AGIVGADGQT HQGAFDLSYL RCIPDMVIMT PSDENECRQM LFTGYHYNDG PTAVRYPRGN 
AQGVALTPLE KLPIGKGLVK RHGEKLAILN FGTLMPEAAK VAEALNATLV DMRFVKPLDD 
TLILEMAAQH DALVTLEENA IMGGAGSGVN EVLMAHRKPV PVLNIGLPDF FIPQGTQEEA 
RAELGLDAAG IEAKIKAWLA