| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SeD_A0457 |
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| Symbol | ribD |
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| ID | 6871382 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011205 |
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| Strand | + |
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| Start bp | 473165 |
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| End bp | 474268 |
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| Gene Length | 1104 bp |
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| Protein Length | 367 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 642783683 |
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| Product | bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase |
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| Protein accession | YP_002214370 |
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| Protein GI | 198244553 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0117] Pyrimidine deaminase
[COG1985] Pyrimidine reductase, riboflavin biosynthesis |
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| TIGRFAM ID | [TIGR00227] riboflavin-specific deaminase C-terminal domain
[TIGR00326] riboflavin biosynthesis protein RibD |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 97 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAGGATG AGTTTTACAT GGCGCGAGCG CTCAAACTGG CGCAGCGTGG ACGTTTCACC
ACTCACCCGA ACCCTAATGT CGGCTGTGTC ATTGTTAACA ATGGCGACAT CGTCGGCGAA
GGTTATCACC AGCGCGCCGG AGAGCCGCAC GCCGAGGTCC ATGCGCTGCG GATGGCGGGC
GCAAAAGCCA AAGGCGCAAC CGCCTATGTC ACGCTTGAAC CCTGTAGCCA TCATGGGCGA
ACGCCGCCAT GTTGCGATGC GCTGATTGCG GCTGGCGTCG CGCGCGTGGT CGCCGCGATG
CAGGACCCGA ACCCACAGGT CGCCGGGCGC GGACTGTATC GCCTGCAACA GGCGGGTATT
GCGGTCAGCC ACGGGTTAAT GATGAGTGAA GCGGAGGCGC TCAATAAAGG CTTCCTCAAA
CGGATGCGTA CCGGATTCCC TTATCTTCAG CTTAAACTGG GCGCCTCCGT CGACGGACGG
ACGGCGATGG CCAGCGGCGA AAGCCAGTGG ATCACCTCGC CGCAGGCCCG GCGCGACGTT
CAGCGCTTGC GTGCGCAAAG TCACGCTATC TTAACCAGTA GCGCGACGGT ATTGGCTGAC
GATCCGGCCT TGACGGTGCG TTGGGCGGAG TTAGACGCCT CTACGCAGGC GTCTTACCCG
CAGGAAAATC TGCGCCAGCC GGTGCGAATT GTTATCGACA GCCAAAACCG GGTAACGCCT
GCGCATCGTA TTGTGCAGCA GCCTGGCGAA ACGTGGATTG CGCGTACCCA GGAAGATAGC
CGCGCGTGGC CCGATTCGGT TCGTACTATC AGCGTGCCGG CGCACAACGG ACATTTGGAT
CTGGTTGTGC TGATGATGCA GTTAGGCAGG CAGCAGATTA ATAGCATATG GGTTGAAGCC
GGACCGGGAC TGGCGGGCGC GTTGCTGCAA GCCGGGCTGG TGGATGAACT GATTGTCTAT
GTCGCGCCTA AATTGTTGGG AACCCAGGCG CGGGGATTAT GCGAATTGCC GGGGCTTGAG
AAGCTCGCCG ACGCGCCGCA ATTTACCTTC AGCGAAATAC GTCATGTCGG CCCGGATGTT
TGCCTGCATA TGGTGAGCGC ATGA
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| Protein sequence | MQDEFYMARA LKLAQRGRFT THPNPNVGCV IVNNGDIVGE GYHQRAGEPH AEVHALRMAG
AKAKGATAYV TLEPCSHHGR TPPCCDALIA AGVARVVAAM QDPNPQVAGR GLYRLQQAGI
AVSHGLMMSE AEALNKGFLK RMRTGFPYLQ LKLGASVDGR TAMASGESQW ITSPQARRDV
QRLRAQSHAI LTSSATVLAD DPALTVRWAE LDASTQASYP QENLRQPVRI VIDSQNRVTP
AHRIVQQPGE TWIARTQEDS RAWPDSVRTI SVPAHNGHLD LVVLMMQLGR QQINSIWVEA
GPGLAGALLQ AGLVDELIVY VAPKLLGTQA RGLCELPGLE KLADAPQFTF SEIRHVGPDV
CLHMVSA
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