Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SeD_A0433 |
Symbol | |
ID | 6871173 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 |
Kingdom | Bacteria |
Replicon accession | NC_011205 |
Strand | - |
Start bp | 449566 |
End bp | 452706 |
Gene Length | 3141 bp |
Protein Length | 1046 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 642783662 |
Product | exonuclease subunit SbcC |
Protein accession | YP_002214349 |
Protein GI | 198245472 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0419] ATPase involved in DNA repair |
TIGRFAM ID | [TIGR00618] exonuclease SbcC |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.2903 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 72 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAATTC TCAGTTTGCG TCTGAAAAAC CTGAACTCGC TGAAAGGAGA ATGGAAGGTC GATTTTACCG CCGAACCGTT TGCCAGTAAC GGGTTATTCG CCATTACCGG CCCGACCGGC GCGGGAAAAA CCACCTTGCT TGACGCCATC TGCCTGGCGC TGTACCACGA AACGCCGCGC CTGAATACGG TATCGCAGTC GCAAAACGAT TTGATGACGC GCGATACGGC GGAATGTCTG GCCGAAGTGG AGTTTGAGGT AAAAGGCGAA GCCTGGCGCG CGTTCTGGAG CCAGAACCGA GCCCGAAATC AGCCTGACGG CAATCTCCAG GCCCCACGCG TAGAGCTGGC GCGGTGTTCA GACGGAAAGA TCTTTGCCGA TAAGGTAAAG GATAAACTGG AGATGATCGC CACGTTGACC GGGCTGGACT ACGGGCGCTT CACCCGTTCG ATGTTGTTAT CACAGGGGCA GTTCGCCGCC TTTCTTAACG CCAAAGCGAA AGAGCGCGCA GAGCTTCTGG AGGAGCTCAC CGGCACTGAG ATTTACGGGC AGATCTCCGC ACAGGTATTT GAAAAACATA AATCAGCCCG TCTCGAACTG GAAAAGTTAC AAGCGCAGGC CAGCGGCGTC GCCCTATTGG CGGACGAACA GTTACAGCAA CTGGAAGCCA GTTTGCAGGC GCTTACTGAC GAAGAGAAAC GCCTGCTGGC CGACCAGCAG GTACAGCAGC AGCACCTTCA CTGGCTGACC CGAAAAAACG AGCTCCACAC TGAATTACAC GCCCGGCAGC AGGCGCTGTA CGCAGCGCAA GAGGCGCGAG AAAAAGCGCA GCCGCAGCTC GCGGCGCTGA CTCTGGCGCA ACCTGCTCGC CAGTTGCGTC CGCATTGGGA GCGCATTCAG GAACAAACCC GCGCCGTTGA GCGTGTTCGC CAGCACAGTG ATGAAGTGAA TGCTCGCTTA CAAAGCGCGT ATCGCCTGCG CCAGCGTATC CGCGCCTGCG CGCATCGACA ATTCACGCAA CTGAACGCCA CAGGGCAGCG GTTGAAGACA TGGCTGGCGG AACACGACGG CATCCGCGTC TGGCGCAGCG AACTGGCGGG GTGGCGAGCA TTATTAACAC AACAATCCCA CGATCGGGCG CAACTGAGCC AATGGCAACA GCAGTTGCTG AGCGATACGC GTCAGCGTGA TGCGCTACCG CCGCTCACGC TCGACCTCAC GCCACAGGCG CTGGCGGAAG CCAGAGCATT GCATACCCGG CAGCGTCCGC TACGCCATCG TCTCGCCGCG CTTCAGGGGC AAATTCTCCC GAAACAAAAG CGTCAGGCGC AGCTACAGGC AGCTATCGCG CGTCATCATC AGGAGCAGGC GCAATACACC CAACGTCTGG CGGATAAGCG TTTGAGTTAT AAGACTAAAG CGCAGGAGCT TGCGGACGTT CGCACTATTT GCGAGCAGGA GGCGCGCATC AAAGATCTGG AAAGCCAGCG GGCGCACTTA CAGTCCGGCC AGCCGTGTCC GCTTTGCGGC TCGACGACGC ACCCCGCCAT CGCCGCCTAT CAGGCGCTGG AACTGAGCGC GAATCAAACC CGCCGCGACG CGCTGGAAAA AGAGGTCAAA ACGCTGGCGG AAGAAGGCGC GGCGCTGCGA GGACAGTTAG ATGCCTTAAC GCAACAATTA CAGCGGGATG AAAGCGAGGC GCAGTCGTTG TTGCAGGAGG AGCAAGCGCT TACTGAGGAA TGGCAAACGC TGTGCGCTAC GCTGGGCGTT CAGCTCCAGC CGCAAGAAGA CCTCGCGGGC TGGCTGACCG CCGCGGAAGA GCATGAGCAA CAGTTGGATC AGCTCAGCCA GCGTCATGCT CTACAAACGC AAATCGCGGC GCATACTGAA CAGGTAGCGC GCTTTACCGC GCAGATTGCG CAGCGTCAGG CGTCGCTGAC GGCTGATTTG GCGCAGTATA CGCTTTCCCT TCCTGCGCCA GAAGACGAGG CTTCGTGGCT GAATGAGCGC GCCGACGAAG CGAAAATATG GCAACAGCGT CAGACAGAGT TCGCGGATTT GCAAACGCAG ATCGACAGGC TTGCCCCGTT GCTGGAGACG CTACCGCAAA CGGATACCGC GGATTCCGAC GACGACGTGC CGCTGGATAA CTGGCGGCAG GCGCATGATG AGTGCGTGTC ATTACAAAGC CAGTTGCAAA CCCTGCAGGA ACAGACGACG CAGGAGCAGC AGCGCGCCGC CGAGGCGATA GCGCACTTTG ATGCGGCGTT AAAAAATAGC CCGTTTGACA GCCAGGCAAC GTTCCTGGCG GCGTTGCTGG ATGAAGAGAC CGTGACCCGT CTGGAAAAAC AACAACAAAC GCTGGAAAGT CAGCTACAAC AAGCGAAGGC GTTAAGCGCG CAGTCCGCGC AGGCGCTGGC TGACCATCAG CAACAGCCGC CCGCTGGTCT GGACCCAACG TGTACGGCGG AGCAGCTCGC GCAGCGGCTG ACGCAGTTGG CGCAACAACT GCGCGAAAAC ACGACACGCC AGGGGGAAAT CCGCCAGCAA ATTAAACAGG ATGCAGATAA TCGGCAGCGC CAACGCGCGC TGATGGCGGA AATGAAGCAA GCCTCTCAGC AAGTGGAAGA CTGGGGCTAT CTCAATGCGC TGATCGGCTC TAAAGAAGGT GATAAGTTCC GCAAATTCGC CCAGGGACTG ACGCTGGATA ATCTGGTCTG GCTGGCGAAT CATCAGCTCA CCCGCCTGCA TGGCCGCTAT TTATTGCAGC GCAAAGCCAG CGACGCGCTG GAACTGGAGG TTGTCGATAC CTGGCAGGCC GACGCCGTGC GCGATACGCG AACGTTATCA GGCGGCGAAA GCTTCCTGGT CAGCCTGGCG CTGGCGCTGG CGTTATCAGA TTTGGTCAGC CATAAAACGC GCATTGATTC TTTGTTCCTC GACGAAGGCT TCGGCACGCT TGATAGCGAA ACGCTGGACG CCGCGCTGGA TGCGCTCGAC GCGCTGAATG CCAGCGGGAA GACCATCGGT GTGATTAGCC ACGTGGAAGC CATGAAAGAA CGTATCCCTG TGCAGATAAA AGTGAAAAAA ATCAATGGGC TTGGTTATAG CAAACTGGAC AAAGCGTTTG CTGTGGAGTA A
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Protein sequence | MKILSLRLKN LNSLKGEWKV DFTAEPFASN GLFAITGPTG AGKTTLLDAI CLALYHETPR LNTVSQSQND LMTRDTAECL AEVEFEVKGE AWRAFWSQNR ARNQPDGNLQ APRVELARCS DGKIFADKVK DKLEMIATLT GLDYGRFTRS MLLSQGQFAA FLNAKAKERA ELLEELTGTE IYGQISAQVF EKHKSARLEL EKLQAQASGV ALLADEQLQQ LEASLQALTD EEKRLLADQQ VQQQHLHWLT RKNELHTELH ARQQALYAAQ EAREKAQPQL AALTLAQPAR QLRPHWERIQ EQTRAVERVR QHSDEVNARL QSAYRLRQRI RACAHRQFTQ LNATGQRLKT WLAEHDGIRV WRSELAGWRA LLTQQSHDRA QLSQWQQQLL SDTRQRDALP PLTLDLTPQA LAEARALHTR QRPLRHRLAA LQGQILPKQK RQAQLQAAIA RHHQEQAQYT QRLADKRLSY KTKAQELADV RTICEQEARI KDLESQRAHL QSGQPCPLCG STTHPAIAAY QALELSANQT RRDALEKEVK TLAEEGAALR GQLDALTQQL QRDESEAQSL LQEEQALTEE WQTLCATLGV QLQPQEDLAG WLTAAEEHEQ QLDQLSQRHA LQTQIAAHTE QVARFTAQIA QRQASLTADL AQYTLSLPAP EDEASWLNER ADEAKIWQQR QTEFADLQTQ IDRLAPLLET LPQTDTADSD DDVPLDNWRQ AHDECVSLQS QLQTLQEQTT QEQQRAAEAI AHFDAALKNS PFDSQATFLA ALLDEETVTR LEKQQQTLES QLQQAKALSA QSAQALADHQ QQPPAGLDPT CTAEQLAQRL TQLAQQLREN TTRQGEIRQQ IKQDADNRQR QRALMAEMKQ ASQQVEDWGY LNALIGSKEG DKFRKFAQGL TLDNLVWLAN HQLTRLHGRY LLQRKASDAL ELEVVDTWQA DAVRDTRTLS GGESFLVSLA LALALSDLVS HKTRIDSLFL DEGFGTLDSE TLDAALDALD ALNASGKTIG VISHVEAMKE RIPVQIKVKK INGLGYSKLD KAFAVE
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