| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SeD_A0407 |
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| Symbol | |
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| ID | 6873927 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011205 |
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| Strand | + |
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| Start bp | 429363 |
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| End bp | 431408 |
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| Gene Length | 2046 bp |
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| Protein Length | 681 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 642783639 |
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| Product | outer membrane autotransporter |
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| Protein accession | YP_002214326 |
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| Protein GI | 198245524 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3468] Type V secretory pathway, adhesin AidA |
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| TIGRFAM ID | [TIGR01414] outer membrane autotransporter barrel domain
[TIGR03304] outer membrane insertion C-terminal signal |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 33 |
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| Fosmid unclonability p-value | 0.000021193 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGGTGACG TTGTGTTTAC GAGTAACTTC AACAATGCTG GCGACGCGAA TGCTGATTCC
AATGGCGATG GTGTTATCAA CGCCAGCGAT GGTTTCAGCA AAATCGGTTA TGACACCAAC
AATGATGGTG TAGAGGATAC GAATGGCGGT TGGAGTCACG ACAACGATAA CGTTGATGAA
CTGAACCTCA AACTGGATAA CGGTAGTAAG TGGGTAGGTG ACGCATACTT TACCTATGAT
CGTATCGATC CGACTGAGAT GTACAATCTT GAAGATGGTA CTAACAGCTT AGAACCTGAT
TCTGTTTTCG ATAAATGGGG CAACGTTGTT GATGACAAGA CCTTCCAGAG CGGTATCTTC
ACTGTAGCGC TGGATAACGG TTCTGAATGG GATACGGTAA ACGCTTCAAA CGTCGATACC
CTAACTGTTA ATAATGGTTC TCAGGTTAAC GTAGCTGATA GTTCTTCTTT AATCGCAGAC
ACCATCACAT TGACCAATGG TTCAACGATG AACCTCAGTT CCTATGGTGA AGTTGATACC
GATCACCTGA CGGTTGATAG TTACAGTAAA GTTGATCTGA CAAACGAAAC TGCTTATCTG
TATGCTAACA CTATTACCGT ATCAAACGGC GGTGAATTCA GCATCGGTGC TGGTGAATTT
GATGCCGATT CTTTCGGTAC GGATACTCTG GAACTGACCA ACGCTGGTGT ATTTAACATC
AACAACAGCG ACTATGTGCT GGATGCAGAT TTGGTTAACG GCCACACCAA TACAACCGAT
ACATCAAATG CTACCTATGG TTACGGTGTC ATCGCTATGA CTTCTGACGG TCATTTGACC
GTGAATGGTA ATGGTGATTA TTACAACGGT GATAACACTG CCGATACTAC TTACAGTGCT
AACGGTGAAG CGGATAATAG CTACACGGAC AATGTTGTAG CGGCTACCGG TAACTATAAA
GTGCGCATCG ACAACGCTAC TGGTGCGGGT TCTGTTGCGG ATTACAAAGG CAACGAGCTG
ATTCGTGTCA ATGACGTAAA CACCGACGCA ACCTTCTCTG CAGCAAACAA AGCTGACCTG
GGTGCTTACA CCTATCAGGC TAAGCAGGAA GGCAACACTG TCGTGCTGGA ACAGATGGAA
CTGACCGACT ACGCTAACAT GGCGCTGAGC ATTCCTTCTG CGAACACCAA TATCTGGAAC
CTGGAACAAG ACACCGTTGG TACTCGTCTG ACCAACGCTC GTCATGGCCT GGCGGATAAC
GGCGGCGCAT GGGTAAGCTA CTTCGGCGGT AACTTCAACG GCGACAACGG CACCATTAAC
TACGATCAGG ATGTTAATGG CATCATGGTC GGTGTTGATA CCAAAGTTGA TGGTAACAAC
GCTAAGTGGA TCGTTGGTGC GGCAGCAGGC TTCGCGAAAG GCGATCTGAG CGATCGTACC
GGTCAGGTGG ATCAGGACAG CCAGTCTGCC TACATCTACT CTTCCGCTCG TTTCGCAAAC
AACATCTTTG TTGACGGTAA CTTGAGCTAC TCTCACTTCA ACAACGATTT GTCTGCTAAC
ATGAGCGACG GTACTTACGT TGACGGCAAC ACCTCTTCTG ACGCCTGGGG CTTCGGCTTG
AAACTGGGTT ATGATCTGAA GCTGGGTGAT GCAGGCTACG TAACGCCTTA CGGCAGCGTA
TCCGGTCTGT TCCAGTCCGG CGACGACTAC CAGCTGAGCA ACGACATGAA AGTTGACGGT
CAGTCTTACG ACAGCATGCG TTATGAACTC GGTGTAGATG CAGGTTATAC CTTCACTTAC
AGCGAAGATC AGGCGCTGAC CCCGTACTTC AAACTGGCTT ACGTTTACGA CGACTCCAAC
AACGATGCTG ACGTAAACGG CGACTCTATC GACAACGGCG TAGAAGGTTC TGCGGTACGT
GTTGGTCTGG GTACTCAGTT CAGCTTCACG AAGAACTTCA GCGCCTACAC CGATGCTAAC
TACCTCGGCG GCGGTGATGT TGATCAAGAC TGGTCTGCAA ACGTTGGTGT TAAATATACC
TGGTAA
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| Protein sequence | MGDVVFTSNF NNAGDANADS NGDGVINASD GFSKIGYDTN NDGVEDTNGG WSHDNDNVDE
LNLKLDNGSK WVGDAYFTYD RIDPTEMYNL EDGTNSLEPD SVFDKWGNVV DDKTFQSGIF
TVALDNGSEW DTVNASNVDT LTVNNGSQVN VADSSSLIAD TITLTNGSTM NLSSYGEVDT
DHLTVDSYSK VDLTNETAYL YANTITVSNG GEFSIGAGEF DADSFGTDTL ELTNAGVFNI
NNSDYVLDAD LVNGHTNTTD TSNATYGYGV IAMTSDGHLT VNGNGDYYNG DNTADTTYSA
NGEADNSYTD NVVAATGNYK VRIDNATGAG SVADYKGNEL IRVNDVNTDA TFSAANKADL
GAYTYQAKQE GNTVVLEQME LTDYANMALS IPSANTNIWN LEQDTVGTRL TNARHGLADN
GGAWVSYFGG NFNGDNGTIN YDQDVNGIMV GVDTKVDGNN AKWIVGAAAG FAKGDLSDRT
GQVDQDSQSA YIYSSARFAN NIFVDGNLSY SHFNNDLSAN MSDGTYVDGN TSSDAWGFGL
KLGYDLKLGD AGYVTPYGSV SGLFQSGDDY QLSNDMKVDG QSYDSMRYEL GVDAGYTFTY
SEDQALTPYF KLAYVYDDSN NDADVNGDSI DNGVEGSAVR VGLGTQFSFT KNFSAYTDAN
YLGGGDVDQD WSANVGVKYT W
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