Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SeD_A0402 |
Symbol | prpD |
ID | 6873119 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 |
Kingdom | Bacteria |
Replicon accession | NC_011205 |
Strand | + |
Start bp | 423494 |
End bp | 424945 |
Gene Length | 1452 bp |
Protein Length | 483 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 642783634 |
Product | 2-methylcitrate dehydratase |
Protein accession | YP_002214321 |
Protein GI | 198241918 |
COG category | [R] General function prediction only |
COG ID | [COG2079] Uncharacterized protein involved in propionate catabolism |
TIGRFAM ID | [TIGR02330] 2-methylcitrate dehydratase |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 0.00000000295232 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGTCCGCAC ATATTTCGAA CATCCGCCCA GACTTTGACC GTGAAATCGT TGATATCGTT GATTACGTTA TGAATTACGA GATCACCTCA AAGGTGGCGT ACGACACCGC GCATTATTGC CTGCTCGACA CGCTTGGCTG TGGTCTGGAA GCGCTGGAAT ACCCGGCCTG TAAAAAATTG CTTGGGCCGA TCGTGCCAGG CACGGTGGTG CCCAACGGCG CACGCGTGCC GGGCACCCAG TTCCAGCTCG ATCCGGTACA GGCAGCCTTT AACATTGGCG CGATGATCCG CTGGCTCGAT TTTAATGATA CCTGGCTTGC CGCCGAGTGG GGCCATCCTT CTGATAACCT CGGCGGTATT CTGGCGATTG CGGACTGGCT GTCACGCAAC GCCGTCGCCG CCGGCAAAGC GCCGCTGACC ATGAAACAGG TATTGAGCGG GATGATCAAA GCCCATGAAA TTCAGGGTTG CATCGCGCTG GAAAACGCCT TCAACCGTGT CGGGCTTGAC CATGTGCTGC TGGTGAAAGT GGCCTCGACT GCGGTGGTCG CTGAAATGCT GGGGCTGACG CGCGATGAGA TCCTCAACGC GGTATCGCTG GCGTGGGTGG ATGGGCAGTC GTTGCGCACT TATCGTCATG CGCCGAATAC CGGTACGCGC AAATCCTGGG CGGCGGGCGA TGCGACTTCG CGCGCGGTAC GTCTGGCGCT GATGGCGAAA ACCGGCGAGA TGGGTTATCC CTCGGCGCTC ACCGCCAAAA CCTGGGGCTT CTACGACGTT TCATTCAAAG GTGAAACGTT CCGTTTCCAG CGTCCTTACG GCTCCTACGT GATGGAAAAC GTGCTATTCA AAATTTCTTT CCCGGCAGAA TTCCACTCGC AAACCGCCGT CGAAGCGGCG ATGACGCTGT ATGAGCAGAT GCAGGCCGCG GGTAAAACGG CAGCGGATAT CGAGAAAGTG ACCATCCGCA CCCACGAAGC CTGTCTCCGC ATTATCGATA AAAAAGGCCC GCTCAATAAC CCGGCGGACC GCGATCACTG TATCCAGTAT ATGGTCGCCG TGCCGTTGCT GTTCGGACGG TTAACCGCGG CGGATTATGA AGACGAGGTG GCGCAGGACA AGCGTATTGA CGCCCTGCGC GAGAAAATCG TGTGTTATGA GGACCCGGCT TTTACCGCCG ACTATCACGA CCCGGAAAAA CGTGCTATCG GCAATGCGAT CACCGTGGAG TTTACTGATG GCTCACGCTT TGGCGAGGTT GTCGTGGAGT ATCCGATTGG TCATGCGCGT CGCCGCGCCG GCGGTATTCC GAAGCTTATC GAAAAATTTA AAATTAACCT GGCGCGTCAG TTCCCGACTC GCCAGCAGCA ACGCATTCTG GATGTCTCCC TGGACAGATC CCGCCTGGAG CAGATGCCGG TTAACGAATA CCTCGATTTA TATGTCATCT GA
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Protein sequence | MSAHISNIRP DFDREIVDIV DYVMNYEITS KVAYDTAHYC LLDTLGCGLE ALEYPACKKL LGPIVPGTVV PNGARVPGTQ FQLDPVQAAF NIGAMIRWLD FNDTWLAAEW GHPSDNLGGI LAIADWLSRN AVAAGKAPLT MKQVLSGMIK AHEIQGCIAL ENAFNRVGLD HVLLVKVAST AVVAEMLGLT RDEILNAVSL AWVDGQSLRT YRHAPNTGTR KSWAAGDATS RAVRLALMAK TGEMGYPSAL TAKTWGFYDV SFKGETFRFQ RPYGSYVMEN VLFKISFPAE FHSQTAVEAA MTLYEQMQAA GKTAADIEKV TIRTHEACLR IIDKKGPLNN PADRDHCIQY MVAVPLLFGR LTAADYEDEV AQDKRIDALR EKIVCYEDPA FTADYHDPEK RAIGNAITVE FTDGSRFGEV VVEYPIGHAR RRAGGIPKLI EKFKINLARQ FPTRQQQRIL DVSLDRSRLE QMPVNEYLDL YVI
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