| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SeD_A0401 |
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| Symbol | prpC |
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| ID | 6872225 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011205 |
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| Strand | + |
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| Start bp | 422287 |
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| End bp | 423456 |
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| Gene Length | 1170 bp |
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| Protein Length | 389 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 642783633 |
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| Product | methylcitrate synthase |
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| Protein accession | YP_002214320 |
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| Protein GI | 198243776 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG0372] Citrate synthase |
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| TIGRFAM ID | [TIGR01800] 2-methylcitrate synthase/citrate synthase II |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.600733 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 0.00000000076827 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGACAGACA CGACGATCCT GCAAAACAAC ACGCATGTCA TTAAGCCTAA AAAATCGGTC
GCGCTTTCCG GCGTACCTGC CGGAAATACC GCTCTGTGTA CCGTGGGAAA AAGCGGTAAC
GATCTGCACT ATCGCGGTTA CGACATTCTC GATCTGGCGG AGCACTGCGA ATTTGAAGAA
GTCGCGCATT TACTGATCCA CGGAAAATTA CCGACCCGCG ACGAGCTGAA CGCGTATAAA
AGCAAGTTAA AAGCGCTGCG CGGATTACCC GCCAATGTCC GTACCGTTCT GGAAGCGTTA
CCGGCGGCCT CGCACCCGAT GGACGTGATG CGTACCGGCG TTTCCGCGCT GGGCTGCACC
CTGCCGGAAA AAGAGGGACA TACCGTCTCC GGCGCGCGCG ATATTGCCGA TAAGCTGTTG
GCCTCGCTCA GCTCTATCCT TCTTTACTGG TATCACTACA GCCACAACGG CGAACGTATT
CAGCCGGAAA CCGACGATGA TTCCATCGGC GGCCATTTCC TGCATCTGCT GCACGGTGAA
AAGCCAACCC AAAGCTGGGA AAAGGCGATG CATATTTCGC TGGTGCTGTA TGCCGAGCAT
GAGTTCAACG CCTCGACGTT TACCAGCCGG GTGATTGCCG GAACCGGCTC GGATGTCTAC
TCCGCGATTA TCGGCGCGAT TGGCGCGCTG CGCGGCCCGA AACACGGCGG GGCGAATGAG
GTGTCGCTGG AAATTCAACA GCGTTATGAA ACGCCGGACG AGGCAGAGGC GGATATCCGT
AAACGCGTGG AAAACAAAGA GGTGGTGATT GGCTTTGGAC ATCCGGTTTA CACCATCGCC
GACCCGCGCC ATCAGGTGAT CAAACGGGTG GCGAAACAGC TTTCAGAAGA AGGCGGCTCG
CTGAAGATGT ACCACATCGC TGACCGTCTG GAAACGGTGA TGTGGGAGAC AAAAAAGATG
TTCCCGAATC TCGACTGGTT TTCGGCGGTC TCCTACAACA TGATGGGCGT CCCTACCGAA
ATGTTCACCC CGCTGTTTGT CATCGCCCGC GTTACCGGCT GGGCGGCGCA CATTATTGAA
CAGCGTCAGG ACAACAAAAT TATTCGCCCC TCTGCCAACT ATACCGGCCC GGACGATCGC
CAGTTTGTGC CGATCGAAAA GCGTTGCTAA
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| Protein sequence | MTDTTILQNN THVIKPKKSV ALSGVPAGNT ALCTVGKSGN DLHYRGYDIL DLAEHCEFEE
VAHLLIHGKL PTRDELNAYK SKLKALRGLP ANVRTVLEAL PAASHPMDVM RTGVSALGCT
LPEKEGHTVS GARDIADKLL ASLSSILLYW YHYSHNGERI QPETDDDSIG GHFLHLLHGE
KPTQSWEKAM HISLVLYAEH EFNASTFTSR VIAGTGSDVY SAIIGAIGAL RGPKHGGANE
VSLEIQQRYE TPDEAEADIR KRVENKEVVI GFGHPVYTIA DPRHQVIKRV AKQLSEEGGS
LKMYHIADRL ETVMWETKKM FPNLDWFSAV SYNMMGVPTE MFTPLFVIAR VTGWAAHIIE
QRQDNKIIRP SANYTGPDDR QFVPIEKRC
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