| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SeD_A0400 |
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| Symbol | prpB |
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| ID | 6874105 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011205 |
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| Strand | + |
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| Start bp | 421277 |
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| End bp | 422164 |
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| Gene Length | 888 bp |
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| Protein Length | 295 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 642783632 |
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| Product | 2-methylisocitrate lyase |
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| Protein accession | YP_002214319 |
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| Protein GI | 198242940 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG2513] PEP phosphonomutase and related enzymes |
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| TIGRFAM ID | [TIGR02317] methylisocitrate lyase |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.0664462 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 0.000000000169441 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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| |
Sequence |
| Gene sequence | ATGTCTTTAC ATTCGCCGGG GCAGGCATTT CGCGCCGCGC TCGCTAAAGA GAATCCATTA
CAAATTGTCG GCGCTATCAA TGCCAACCAT GCTCTGTTGG CCCAACGGGC CGGGTATCAG
GCTATCTATC TTTCTGGCGG CGGCGTAGCG GCGGGCTCGC TCGGACTGCC GGATCTGGGG
ATTTCGACGC TGGATGATGT GTTAACCGAT ATCCGGCGCA TCACGGATGT TTGCCCGCTG
CCGCTGTTGG TGGATGCGGA TATTGGCTTT GGCTCCTCCG CCTTTAATGT CGCGCGGACG
GTAAAGTCCA TAGCCAAAGC GGGCGCCGCC GCGCTGCATA TTGAAGACCA GGTTGGCGCT
AAGCGCTGTG GACACCGTCC AAACAAAGCG ATCGTCTCGA AAGAGGAGAT GGTAGACAGA
ATTCGGGCGG CAGTGGATGC GCGCACCGAT CCGAACTTTG TGATCATGGC GCGTACCGAT
GCGCTGGCGG TGGAAGGGCT GGAGGTGGCT CTCGATCGTG CGCAGGCTTA CGTGGACGCG
GGGGCTGACA TGCTGTTCCC GGAGGCGATC ACCGAACTGT CGATGTACCG CCAGTTCGCC
GACGTGGCGC AGGTGCCGAT CCTCGCCAAC ATCACTGAGT TTGGCGCGAC GCCGCTGTTT
ACGACCGACG AGTTGCGCAG CGCAAACGTG GCGATGGCGC TCTATCCGCT GTCGGCGTTT
CGCGCCATGA ACCGCGCCGC AGAAAAAGTC TATACCGTGC TGCGCCAGGA AGGGACGCAA
AAGAACGTGA TCGACATCAT GCAGACCCGC AACGAGCTGT ACGAAAGCAT CAATTACTAC
CAGTTCGAAG AGAAGCTGGA CGCGCTGTAC AGGAATAAAA AATCGTAG
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| Protein sequence | MSLHSPGQAF RAALAKENPL QIVGAINANH ALLAQRAGYQ AIYLSGGGVA AGSLGLPDLG
ISTLDDVLTD IRRITDVCPL PLLVDADIGF GSSAFNVART VKSIAKAGAA ALHIEDQVGA
KRCGHRPNKA IVSKEEMVDR IRAAVDARTD PNFVIMARTD ALAVEGLEVA LDRAQAYVDA
GADMLFPEAI TELSMYRQFA DVAQVPILAN ITEFGATPLF TTDELRSANV AMALYPLSAF
RAMNRAAEKV YTVLRQEGTQ KNVIDIMQTR NELYESINYY QFEEKLDALY RNKKS
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