Gene SeD_A0375 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeD_A0375 
Symbol 
ID6874216 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Dublin str. CT_02021853 
KingdomBacteria 
Replicon accessionNC_011205 
Strand+ 
Start bp392177 
End bp392920 
Gene Length744 bp 
Protein Length247 aa 
Translation table11 
GC content40% 
IMG OID642783609 
Productputative response regulator 
Protein accessionYP_002214296 
Protein GI198245157 
COG category[K] Transcription 
COG ID[COG3710] DNA-binding winged-HTH domains 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.99344 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones47 
Fosmid unclonability p-value0.0181378 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGTCAGA ACAATTATCT GATTGACAAA AGAGTTATTC TTGATTGTGA ACGAATGACG 
CTTTCCTGCG CCGGAGAGTC GATAACGATA TCTGAATCGG AACGCAGTTT GCTTATCGCT 
TTTCATGAAG GCCTTTTTAA AAAAGATGAT TTAATTAACT ATGTCTGGGG GCGCAAAGGT 
GTCGTGGTCT CTGATGCCAG TTATTATAAA TTGATTAACC AGCTACGAGG GTCATTTGAT 
AAAATTGGTC TTAAGGGGGC GTCTGTTGTG ACTCGTCCTC GCGTGGGTGT TTTACTCTCA 
GTTTCCATTG AACCGTTGAG TGATGAGGCG CAAAATACGC CGTTGCCTGC TGTTGCTGAA 
ACAGAAGTAT CGACGGTTGA AGTGCGGCAC GATGACACTA TTATTACCCC AATACCGGGC 
GCTGTGAATA AAAAAGATTG GCTCTACTTT TGCCTGGCCG CGCTTCTGAT GTTTTTTATG 
ATGTATAAAG TTAAGGGTGA AAATATTGAT TACTTTACCC TCCAGGGTTC GTATGATGGA 
TACACTTTTT ATAGTGTCGG GCATGATAAA ACCCATCTGA CGGATATCGT TGAAGCGTAC 
TCTGAGATGA GTAATGAAAT ACATAAACAA AACGGAAAAA TCATTTATTA CATTCGCGTT 
CCTAATACAA ATATTTTTGT CCAGTGTCTT AACCAACTTG ATATAGCGGA GCCGAAATGC 
ATTTCCATAA AAGAACGTTA TTAA
 
Protein sequence
MSQNNYLIDK RVILDCERMT LSCAGESITI SESERSLLIA FHEGLFKKDD LINYVWGRKG 
VVVSDASYYK LINQLRGSFD KIGLKGASVV TRPRVGVLLS VSIEPLSDEA QNTPLPAVAE 
TEVSTVEVRH DDTIITPIPG AVNKKDWLYF CLAALLMFFM MYKVKGENID YFTLQGSYDG 
YTFYSVGHDK THLTDIVEAY SEMSNEIHKQ NGKIIYYIRV PNTNIFVQCL NQLDIAEPKC 
ISIKERY