Gene SeD_A0360 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeD_A0360 
Symbol 
ID6871233 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Dublin str. CT_02021853 
KingdomBacteria 
Replicon accessionNC_011205 
Strand+ 
Start bp374799 
End bp376031 
Gene Length1233 bp 
Protein Length410 aa 
Translation table11 
GC content43% 
IMG OID642783595 
Productputative permease 
Protein accessionYP_002214282 
Protein GI198243650 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2814] Arabinose efflux permease 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones6 
Plasmid unclonability p-value0.171348 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones68 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAAATA ATATTGAAGA GACAATAGGT AAGTACTTGC CTATTTTAAT GATATTACCT 
CTGGCGGGTT TGGCAGAGTT AGCTTCTTTA TATTCAATCC AGGCTTTATT ACCAAAGTTA 
AGTGAGGTTT ATAATATCCC ATTGAATCAG GTAGGGATGA TTTTGTCTGC TGAGGTGGGG 
TTTCTGGCAT TAGCCATGTT ATTTAGCGGC ACGTTATCTG ACCGTTTTGG GCGAAAGCCA 
ATCATTTTTT ATTCGTTGCT GGCAGGAGGT ATTTTAACTC TATTGTGCGC AACTACATCA 
TCATGGCCGA TGCTGGTGGT ATACCGCGCT TTGCTCGGCA TTGCAGTAAG TGGTATTACG 
GCGGCCGTTA CAGTCTATAT CAGTGAAGAA GTCTCTCCTG CTTTGGCAGG GATTGTTACT 
GGATATTTTA TTTTTGGCAA TTCGCTAGGG AGTATGTCTG GTCGTGTGTT TGCAACTTTG 
ATGATGGAGC ATGTATCTAT AGATACGATT TTCTTTATCT TCGGTGGTGT TCTGATTGCT 
ATGGCACTCG CGGTGAAGTT GTTTCTCCCG ACATCCCGAC AGTTTGTTCC TACACCTTCA 
CTACAGCTTG GTGCAGTGTT GAAAGGCGGG TTGGAACATT TTAAGAATAT CCGCGTATCG 
TTATGTTTTG TCATTGGATT TATTCTTTTC GGCTCTTTTA CGTCCATCTT TAATTTTCTG 
GCGTTTTACC TGCATCGACC GCCTTATGAG CTGAGCTACA CCTGGATAGG TTTGATTCCA 
GTTAGCTTCT CATTAACTTT TTTTCTTGCG CCATATGCTG CCCGTGTCGC GTTGAATATT 
GGGTCGATGA ATGCGCTCAG TATGCTGATT ATCTGTATGA TGGTCGGTGC ATTTCTTACG 
CTAATCGCCC CTTCTCTGTG GGTTTTCATT TCAGGTATCG TTTTACTGTC AGTCGCATTT 
TTCTCTGCTC ATTCCACCGT ATTAGCCTGG GTCAGTTCAC GGAGTCCAAA CGCAAAAGGA 
CAGGCGACAT CGTTTTATCT GCTTTGCTAC TACTCTGGCG GTGCAGTAAT GGGGTATTTA 
AACGGGTATC TTTTCTCCTG GCAGGGATGG AATGCTATTG CGGCATCATG TCTGATGATG 
CTGGGGATAG GATTATTTAT CTGCCGGTTT ATTTTCGCAA AATATGAGAA ACAACCGCAA 
ATCAAAACAC AGTCAGTTCA GGAGAGTTTC TGA
 
Protein sequence
MKNNIEETIG KYLPILMILP LAGLAELASL YSIQALLPKL SEVYNIPLNQ VGMILSAEVG 
FLALAMLFSG TLSDRFGRKP IIFYSLLAGG ILTLLCATTS SWPMLVVYRA LLGIAVSGIT 
AAVTVYISEE VSPALAGIVT GYFIFGNSLG SMSGRVFATL MMEHVSIDTI FFIFGGVLIA 
MALAVKLFLP TSRQFVPTPS LQLGAVLKGG LEHFKNIRVS LCFVIGFILF GSFTSIFNFL 
AFYLHRPPYE LSYTWIGLIP VSFSLTFFLA PYAARVALNI GSMNALSMLI ICMMVGAFLT 
LIAPSLWVFI SGIVLLSVAF FSAHSTVLAW VSSRSPNAKG QATSFYLLCY YSGGAVMGYL 
NGYLFSWQGW NAIAASCLMM LGIGLFICRF IFAKYEKQPQ IKTQSVQESF