Gene SeD_A0334 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeD_A0334 
Symbol 
ID6871792 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Dublin str. CT_02021853 
KingdomBacteria 
Replicon accessionNC_011205 
Strand+ 
Start bp352232 
End bp353179 
Gene Length948 bp 
Protein Length315 aa 
Translation table11 
GC content40% 
IMG OID642783572 
ProductLysR family transcriptional regulator SinR 
Protein accessionYP_002214260 
Protein GI198241903 
COG category[K] Transcription 
COG ID[COG0583] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.997611 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones57 
Fosmid unclonability p-value0.270233 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATGGAAC TGATCAATAA TCGTGGTATG CGAGACTGGA TGATATTTAT TAAAGTGGCG 
GAAGTAGGGA ATCTTTCCCG GGCTGCACGG GAATTAGATA TTAGCATTTC TGCTGTCAGT 
AAATCGCTTA GCCGCCTTGA GAATTCTATT GAGGTTACTT TACTTCGGCG CGATTCACAT 
CACTTAGAAC TGACTGGAGC TGGTCAGACA GCCTATGCAA GCATGAAAAG GATAACATCT 
TCCTTTCAGT CCTTGCTGGA TGAATTGCGA AATCCGGATA AAATTATCAG AGGGAGTATA 
AAATTTTCGG CTCCGGCTAT TGTCTGTGAG TTTCTTGCCA ATAAGTGGAT ATGGGAATTT 
ACAGCTAGCT ATCCGGATAC AAAAATCTAC CTGGATTCAC GAGAGCGTAG CGATTTTTTT 
AGTAAATCCC TGGAGTTTGA TGAGCTGGTT TTTAAAAGTG GCATAATCGA AAGTGAGGAT 
CTCGTGTATC GAAAGATAAG CCCTTTAAAG TTGGCTCTTT GTGCGAGTCC GAAATATATC 
AGAAAATATG GCAGGATCTC ACACCCTGGC GATTTGGAAA ATCACATTAT TGTGGGTCTT 
CACAATCATG GTCTTTCCGG ACCTCTTACT CTTTTCCGTC AAGATGAATC ATACACTATT 
AGTGGCGCTG TTAATGTTCA TTTATCTTCC AATAATCTTT TGAGTGTTCT TAATTTGGTT 
TTAGAAGGAA AGGGTATCAA CCTTATGACT CCGGCCTGGC TTGCCACCAA ATACTTAAAA 
AATAATGAAC TTGAAATTAT ACTTCCTGAA TGGAGGGTCC CAGATCTCCC CATTTATCTT 
GTATGGCGTC ATCGTCAGTA TTATTCTCCT TTATTTCAAC GCTTTCTGTC TTTTATTGAA 
GATAAATGGA ATAATCGCCC ACAAATTGAT TTTCTGAATG ATGATTAA
 
Protein sequence
MMELINNRGM RDWMIFIKVA EVGNLSRAAR ELDISISAVS KSLSRLENSI EVTLLRRDSH 
HLELTGAGQT AYASMKRITS SFQSLLDELR NPDKIIRGSI KFSAPAIVCE FLANKWIWEF 
TASYPDTKIY LDSRERSDFF SKSLEFDELV FKSGIIESED LVYRKISPLK LALCASPKYI 
RKYGRISHPG DLENHIIVGL HNHGLSGPLT LFRQDESYTI SGAVNVHLSS NNLLSVLNLV 
LEGKGINLMT PAWLATKYLK NNELEIILPE WRVPDLPIYL VWRHRQYYSP LFQRFLSFIE 
DKWNNRPQID FLNDD