Gene SeD_A0290 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeD_A0290 
Symbol 
ID6875259 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Dublin str. CT_02021853 
KingdomBacteria 
Replicon accessionNC_011205 
Strand
Start bp306567 
End bp307502 
Gene Length936 bp 
Protein Length311 aa 
Translation table11 
GC content60% 
IMG OID642783534 
ProductSciB protein 
Protein accessionYP_002214222 
Protein GI198245445 
COG category[S] Function unknown 
COG ID[COG3520] Uncharacterized protein conserved in bacteria 
TIGRFAM ID[TIGR03347] type VI secretion protein, VC_A0111 family 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones63 
Fosmid unclonability p-value0.718138 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGGCGCG TGGATGCCCA GCTCTGTGAT ACTCCGGCAG GCAGTATCTG GCAGCCACGG 
ATGGAAAAAT TCCGTCTGGG ACAGACGCCG ACGATGACCT TTGCGCCACG GGAAATCGCC
CAGGTCAGCT GGCAGGATGG ACGCCTGCAC CTGAGCCTGT ACAGCCTCGG ACTATGGGGG
CCAAACGGCC CGTTGCCGCT GCACTATACC GAGCTGGCGC TAAACCGCTC AGAGAGTCGT
CACGATCCGA CGCTGGTTCA TTTTTCCAAT ATTTTTCACC ACCGCTGGCT AACGCAGTTC
TGGCAGGCAT GGCGCAGCGC CCAGTCCGCT GGTGGCGGGC TGGACAAACC GGAACACGAC
CGTTTTGCGT TTTATATCGC CAGTCTCAGC GGGCAGGATC TACGGGAAAG CGCCGAAAGC
CCGCTGTCAG ATCATGTTCG CCTGGCAGCC TCCGCCCATC TGGTACGCGA ATCGCGCAAT
CCTGACGGGC TGGCCGCCAC GCTGGCGCAC TATTTCAGCG TACCTTTTGC GGTGAAAGAG
TTCGCCCTGC ACTGGATAAC GGTGGCGAAC GATGAAATCA CCCGTCTGGG CACGCCCGCG
CAGTCTTCGG TGCTGGGCAA CGGGGCGCTT ATCGGCCAGG CCGTACCGGA TATGCAGTAC
AAATTCCGGC TAATTATCGG CCCGCTCACG CTGGAGGATT ACCTGCGTTT TCTGCCCGGC
GGCAACAATC TGCCCGTGCT GACAGAACTG GTGCGTACGT TCATTGGTTT TGAATATTGC
TGGGAAATTG AGCTGCAGTT GAAGCCTCAT GCCGCACCGC CTGCGGTGAT CGGCGGCGCG
CAGCGGCTTG GCTGGACGGC CTGGGCAGGT AAAGCCATGC ATGACCGTCC GGTGACCGGC
ATGATTTTTG AACCTGAACA CGGCTTAACC CACTGA
 
Protein sequence
MRRVDAQLCD TPAGSIWQPR MEKFRLGQTP TMTFAPREIA QVSWQDGRLH LSLYSLGLWG 
PNGPLPLHYT ELALNRSESR HDPTLVHFSN IFHHRWLTQF WQAWRSAQSA GGGLDKPEHD
RFAFYIASLS GQDLRESAES PLSDHVRLAA SAHLVRESRN PDGLAATLAH YFSVPFAVKE
FALHWITVAN DEITRLGTPA QSSVLGNGAL IGQAVPDMQY KFRLIIGPLT LEDYLRFLPG
GNNLPVLTEL VRTFIGFEYC WEIELQLKPH AAPPAVIGGA QRLGWTAWAG KAMHDRPVTG
MIFEPEHGLT H