| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SeD_A0256 |
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| Symbol | ldcC |
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| ID | 6871939 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011205 |
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| Strand | + |
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| Start bp | 276860 |
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| End bp | 279001 |
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| Gene Length | 2142 bp |
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| Protein Length | 713 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 642783501 |
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| Product | lysine decarboxylase, constitutive |
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| Protein accession | YP_002214195 |
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| Protein GI | 198245178 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG1982] Arginine/lysine/ornithine decarboxylases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 61 |
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| Fosmid unclonability p-value | 0.686506 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACATCA TCGCCATTAT GGGGCCGCAC GGGGTTTACT ATAAAGATGA ACCCATCAAG
GAGCTTGAGC GTGCATTACA ATCCCTGGGA TTTCAAATTA TCTGGCCGCA AAATAGCGTT
GACTTGTTGA AGTTTATTGA ACATAACCCG CGCATCTGCG GCGTTATTTT TGACTGGGAT
GAATACAGTC TCGACCTTTG TAGCGAAATC AACCAGCTAA ATGAATACCT TCCTCTCTAC
GCCTTTATCA ATACCAACTC CACGCTGGAC GTTAGCGTTC ACGATATGCG CATGGCGCTG
TGGTTTTTTG AGTATGCATT GGGGCTGGCT GAAGATATCG CGACGCGCAT TCATCAATAT
ACAAACGAAT ATCTCGATAA TATTACGCCG CCGTTTACCA AAGCGCTTTT TACCTACGCC
AAAGAAGGAA AATATACCTT TTGTACGCCG AGTCATATGG CGGGAACGGC GTATCAGAAA
AGCCCGCCAG GCTGCCTGTT TTATGACTTT TTTGGCGGCA ATACCTTAAA AGCTGATGTG
TCGATTTCGG TGACTGAACT GGGATCGCTG CTGGATCACA CCGGGCCGCA TCTGGAAGCG
GAAGAGTATA TCGCCCGTAC TTTTGGCGCC GAGCAGAGCT ATATGGTGAC GAACGGTACG
TCGACCTCGA ATAAAATTGT CGGTATGTAT GCCGCGCCTG CGGGAAGTAC GCTACTCATT
GATCGTAATT GTCATAAATC GCTGGCGCAT TTGCTGATGA TGAGCGATGT GGTGCCTCTC
TGGTTGAAGC CGACGCGCAA TGCGCTCGGT ATTCTCGGCG GTATTCCTAA GCGTGAATTT
ACCCGCGACA GCATTACGCG TAAGGTGGCG GAAACCGCGC AGGCGCAATG GCCGGTTCAT
GCGGTTATCA CCAATTCTAC TTACGATGGT CTGTTGTATA ACACTAACTG GATCAAGCAG
ATGCTGGACG TTCCCTCGAT CCATTTTGAT TCCGCCTGGG TACCCTATAC CCATTTCCAT
CCGATCTACC AGGGGAAAAG CGGGATGAGC GGCGATCGGG TGCCCGGAAA AGTGATTTTC
GAAACGCAAT CCACCCATAA AATGCTGGCG GCTTTTTCGC AGGCGTCGCT TATTCATATC
AAAGGGGAAT ATGACGAAGA GACGTTTAAC GAAGCGTTTA TGATGCACAC TTCCACATCG
CCGAGCTATC CCATTGTCGC CTCTATCGAG ACCGCGGCGG CGATGCTGCG CGGCAATCCA
GGGAAAAGAT TGATTAATCG TTCGGTGGAA CGGGCGCTCC ATTTTCGTAA AGAAGTACAG
CGGTTACGTG AAGAGTCCGA TAGCTGGTTC TTTGATATCT GGCAGCCGGA AGAGGTTGAT
GAGGCCGAAT GCTGGCCGGT CACGCCGGGA GAAACCTGGC ATGGCTTCGC CGATGCTGAT
GACGATCATA TGTTTCTCGA TCCGGTTAAG GTGACAATCC TGACGCCGGG GATAGATGAG
CAGGGCAACA TGAGCGAAGA GGGGATACCC GCCGCGCTGG TGGCGAAGTT CCTCGATGAG
CGAGGCGTGG TGGTGGAAAA AACCGGGCCG TATAATCTGC TGTTTTTGTT CAGCATAGGG
ATTGATAAGA CCCGTGCGAT GGGGCTGCTG CGCGGACTGA CAGAATTTAA ACGCGCCTAC
GATCTTAACC TGCGCGTCAA AAATATGTTG CCGGATCTGT ATGCGGAAGA TCCGGATTTT
TATCGCAATA TGCGCATTCA GGATCTGGCG CAGGGGATCC ATAAACTGAT CCGCCAGCAC
GATCTTCCGG GGCTGATGCT GCGGGCGTTC GAGGTTTTAC CGGAGATGAT CATGACCCCG
CACCAGGCCT GGCAGCGTCA GATCAAAGGC GAGGTGGAAA CCGTGGCGCT CGATCAACTG
CCAGGGCGCG TTTCCGCGAA TATGATCCTG CCTTATCCGC CAGGCGTTCC GCTGTTGATG
CCCGGCGAGA GGATTACGCA ACAGAGTCGG GCCGTGCTCG ATTTTCTGCT GATGCTCTGC
TCGATTGGCC AGCATTATCC CGGTTTTGAA ACGGATATTC ACGGCGCGAA ACGGAATGAA
GACGGGGTGT ACCAGGTACG AGTCTTAAAA CACGCCTGTT AG
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| Protein sequence | MNIIAIMGPH GVYYKDEPIK ELERALQSLG FQIIWPQNSV DLLKFIEHNP RICGVIFDWD
EYSLDLCSEI NQLNEYLPLY AFINTNSTLD VSVHDMRMAL WFFEYALGLA EDIATRIHQY
TNEYLDNITP PFTKALFTYA KEGKYTFCTP SHMAGTAYQK SPPGCLFYDF FGGNTLKADV
SISVTELGSL LDHTGPHLEA EEYIARTFGA EQSYMVTNGT STSNKIVGMY AAPAGSTLLI
DRNCHKSLAH LLMMSDVVPL WLKPTRNALG ILGGIPKREF TRDSITRKVA ETAQAQWPVH
AVITNSTYDG LLYNTNWIKQ MLDVPSIHFD SAWVPYTHFH PIYQGKSGMS GDRVPGKVIF
ETQSTHKMLA AFSQASLIHI KGEYDEETFN EAFMMHTSTS PSYPIVASIE TAAAMLRGNP
GKRLINRSVE RALHFRKEVQ RLREESDSWF FDIWQPEEVD EAECWPVTPG ETWHGFADAD
DDHMFLDPVK VTILTPGIDE QGNMSEEGIP AALVAKFLDE RGVVVEKTGP YNLLFLFSIG
IDKTRAMGLL RGLTEFKRAY DLNLRVKNML PDLYAEDPDF YRNMRIQDLA QGIHKLIRQH
DLPGLMLRAF EVLPEMIMTP HQAWQRQIKG EVETVALDQL PGRVSANMIL PYPPGVPLLM
PGERITQQSR AVLDFLLMLC SIGQHYPGFE TDIHGAKRNE DGVYQVRVLK HAC
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