Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SeD_A0242 |
Symbol | dxr |
ID | 6871288 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 |
Kingdom | Bacteria |
Replicon accession | NC_011205 |
Strand | + |
Start bp | 258598 |
End bp | 259881 |
Gene Length | 1284 bp |
Protein Length | 427 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 642783487 |
Product | 1-deoxy-D-xylulose 5-phosphate reductoisomerase |
Protein accession | YP_002214181 |
Protein GI | 198243983 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG0743] 1-deoxy-D-xylulose 5-phosphate reductoisomerase |
TIGRFAM ID | [TIGR00243] 1-deoxy-D-xylulose 5-phosphate reductoisomerase |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.955308 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 65 |
Fosmid unclonability p-value | 0.933942 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGTACAAAG CGCCGCGCAG AAGACATTAT CAGGTCTCCT GTGCGGCGTT TTGCTTTTTA TTCCGTTTCA ACACTTCTGG ACGTTTCATG AAGCAATTAA CCATTCTGGG CTCGACCGGC TCTATTGGTT GCAGCACACT GGACGTGGTG CGCCATAATC CTGATAGCTT CCGCGTTATC GCGCTGGTGG CGGGTAAAAA TGTCGCCCGC ATGGCGGAGC AGTGCCTGGA GTTCTCGCCG CGTTATGCCG TGATGGACGA TACGTCGAGC GCAGAACAGC TCAAAATAAT GCTTCAGCAG CATGGCAGCC GCACCGAGGT TCTGAGCGGT CAGCAGGCTG CCTGTGAGAT GGCGGCGCTT GATGAGGTCG GGCATGTGAT GGCGGCCATT GTGGGCGCGG CTGGTTTACT GCCGACCCTG GCGGCGATTC GCGCAGGGAA GACGATTCTG CTGGCGAATA AAGAATCGCT GGTGACCTGC GGGCGGCTGT TTATGGACGA AGTAAAACGC AGCAACGCCC GGCTTTTACC CGTCGATAGC GAACATAACG CGATTTTTCA GAGTTTGCCG CAATCTATTC AGCATAATCT GGGATACGCT GACCTTGAGC AAAATGGCGT AACGTCGATT TTGCTTACCG GGTCTGGTGG CCCGTTTCGT GAAACGCCCA TGTGCGATCT GGCAGCGATG ACGCCGGATC AGGCATGTCG TCATCCGAAC TGGTCGATGG GGCGAAAAAT CTCCGTCGAC TCCGCCACCA TGATGAATAA AGGTCTGGAA TACATTGAAG CGCGTTGGTT ATTTAATGCC AGCGCACGTC AGATGGAAGT GTTGATCCAT CCGCAATCGG TCATTCATTC GATGGTGCGT TATCAGGACG GCAGCGTCCT GGCGCAGCTT GGAGAACCTG ACATGCGTAC GCCTATTGCG CATACGATGG CATGGCCGAA TCGCGTCACG TCCGGCGCGC AGCCGCTCGA TTTTTGCAAA CTCAGCGCGC TGACGTTTAG CGCGCCAGAT TATCAGCGTT ATCCTTGCCT GAAGCTGGCG ATGGAGGCGT TTGAGCAAGG TCAGGCGGCA ACGACGGCGC TCAATGCGGC AAACGAAATC ACCGTTGCCG CGTTTCTGGC GCAACAGATT CGTTTTACCG ATATCGCCGG GCTCAATTTA GCGGTGCTGG AGAGGATGGA TTTACACGAA CCGGCAAGCG TTGAGGACGT ATTGCAGGTT GACGCCATCG CGCGTGAAGT AGCCAGAAAA CAAGTGATAC GGCTCTCACG CTGA
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Protein sequence | MYKAPRRRHY QVSCAAFCFL FRFNTSGRFM KQLTILGSTG SIGCSTLDVV RHNPDSFRVI ALVAGKNVAR MAEQCLEFSP RYAVMDDTSS AEQLKIMLQQ HGSRTEVLSG QQAACEMAAL DEVGHVMAAI VGAAGLLPTL AAIRAGKTIL LANKESLVTC GRLFMDEVKR SNARLLPVDS EHNAIFQSLP QSIQHNLGYA DLEQNGVTSI LLTGSGGPFR ETPMCDLAAM TPDQACRHPN WSMGRKISVD SATMMNKGLE YIEARWLFNA SARQMEVLIH PQSVIHSMVR YQDGSVLAQL GEPDMRTPIA HTMAWPNRVT SGAQPLDFCK LSALTFSAPD YQRYPCLKLA MEAFEQGQAA TTALNAANEI TVAAFLAQQI RFTDIAGLNL AVLERMDLHE PASVEDVLQV DAIAREVARK QVIRLSR
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