Gene SeD_A0233 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeD_A0233 
Symbol 
ID6874882 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Dublin str. CT_02021853 
KingdomBacteria 
Replicon accessionNC_011205 
Strand+ 
Start bp248790 
End bp250091 
Gene Length1302 bp 
Protein Length433 aa 
Translation table11 
GC content51% 
IMG OID642783479 
Productmajor facilitator family transporter 
Protein accessionYP_002214173 
Protein GI198245072 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones4 
Plasmid unclonability p-value0.0442983 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones72 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCCGGAA CGTATAATGC TACTATTCGC CGGGTGGTGG TTTCCGCCTG GATAGGAAAC 
TCCATTGAAT ATTATGATTT TCTATTATAC GGCCTGGCAA GCGCGCTGGT ATTTGGCCCG 
CTTTTTTTCC CTGGCGCCAG CCCATTGACT GCAACGTTAT CTTCTTTTGC CAGTTTTGGC 
GTGGGATTTA TCTCCCGGCC GCTGGGCGCG CTATTTTTTG GCAACAGGGG AGATACGCTT 
GGGCGTAAAA ACACGTTATT AATCACGTTA GGGGGGATGG GCGCGGTCAC GTTTCTCATC 
GGTTGCCTGC CTTCTTACGC CAGTATTGGC GCGCTGGCGC CTGTTTTACT GGTTATTCTG 
CGTTTTCTGC AGGGATTTAT GGTTGGAGGC GAATGGGGAG GCGCCATGTT GATGGTCGTG 
GAATATGCTG CTGGAAAGCA CCGGGGGCGG TTAAGCGCGC TATCGCAAAC AGGAGGACTC 
ACGGGACAAT TATTGGCGAC AGGCGTATTT ATAGTCGTGA CCCAATTACC GCAGGAGGCG 
TTGTTATCGT GGGGATGGCG TATTCCTTTT CTGCTCAGTG CGCTTTTGGT GTTGCCTGGA 
TTATATATGC GTCATCGTCT GGATGAGACG CCTGTCTTCC GTGCGTTTAA AAAGCAGCAG 
GCCATTAATC ATAGGCAGCA AAGAGAAGAA AGGCCGGTGG TCAAAGTAGT ACGAGAACAA 
TGGCGTAGCA TTTTGCTGAT TATAATTCTG CGTTTTGCGG AAAGCGTTCC CTTTTTTCTT 
GCTACCGTCT TCGCGGTTTC CTGGGCGACG ACGCAGCTTG GGATTGCCAG CCTGACTATT 
CTGTACATTG TAATGTTCAC CTGTCTGCTG GCGTATCCCA TGCACGTGCT ATTTGGCATC 
ATGTCGGATC GGCGTGGCTG CCGTCAGGTG TATATTTTCG GCGCGCTTTT TGTCGCGGCA 
ATGGCTTTTC CCTTTTTCTG GCTGCTGGAA AGCCGTTCGC TCATACTGAT GACAATGGGC 
TACGTTTTGC TTATTAACAT TGGTCATAAT TCACTGAATG CCGTGCAACC TTCTTTTTTC 
GCCGGACTGT TTCATCCGCC TGTACGCTAC AGCGGTTCAT CAATTGGCGC TCAGTTGGGG 
GCGGTTGTGG CAGGGGGATT CACGCCGTTT ATCGCTAAAG CGTTAAGCGC AGTCTATGAT 
AACAGTTGGA CTTTGGTTGC CGGTTATGTC GTTTTGACTG CGCTGGCTTC GGCGTTTGCG 
GCAAAGATTG CGCCGGAAAC CGTGTTACCG CATTCACCGT AA
 
Protein sequence
MSGTYNATIR RVVVSAWIGN SIEYYDFLLY GLASALVFGP LFFPGASPLT ATLSSFASFG 
VGFISRPLGA LFFGNRGDTL GRKNTLLITL GGMGAVTFLI GCLPSYASIG ALAPVLLVIL 
RFLQGFMVGG EWGGAMLMVV EYAAGKHRGR LSALSQTGGL TGQLLATGVF IVVTQLPQEA 
LLSWGWRIPF LLSALLVLPG LYMRHRLDET PVFRAFKKQQ AINHRQQREE RPVVKVVREQ 
WRSILLIIIL RFAESVPFFL ATVFAVSWAT TQLGIASLTI LYIVMFTCLL AYPMHVLFGI 
MSDRRGCRQV YIFGALFVAA MAFPFFWLLE SRSLILMTMG YVLLINIGHN SLNAVQPSFF 
AGLFHPPVRY SGSSIGAQLG AVVAGGFTPF IAKALSAVYD NSWTLVAGYV VLTALASAFA 
AKIAPETVLP HSP