Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SeD_A0139 |
Symbol | ddl |
ID | 6871651 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 |
Kingdom | Bacteria |
Replicon accession | NC_011205 |
Strand | + |
Start bp | 148227 |
End bp | 149084 |
Gene Length | 858 bp |
Protein Length | 285 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 642783388 |
Product | D-alanine--D-alanine ligase |
Protein accession | YP_002214082 |
Protein GI | 198242528 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG1181] D-alanine-D-alanine ligase and related ATP-grasp enzymes |
TIGRFAM ID | [TIGR01205] D-alanine--D-alanine ligase |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 61 |
Fosmid unclonability p-value | 0.517972 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCTGATA AAATCGCGGT CCTGTTGGGC GGAACCTCTG CGGAGCGGGA CGTTTCGTTA AATTCCGGCG CGGCAGTGTT GGCCGGGTTA CGTGAAGGCG GTATTGATGC GCATCCCGTC GATCCGCAAG AGGTCGATGT CGCGCAGCTT AAAGCAATGG GCTTTCAGAA GGTCTTTATT GCGTTGCATG GCCGCGGCGT GATGGCCTCG GCGCTTTCCA TGGATAAACT GCGCAGTAAA TTGCTGTGGC AGGGCGCGGG CTTACCGGTT GCGCCGTGGG TCGCATTGAC GCGCGCTGAG TTTGAAAAAG GCCTTAGCGA AGAACAAAAA GCGCGAATTT CGGCGCTGGG TTTACCGCTG ATCGTCAAAC CCAGCCGTGA AGGCTCCAGC GTCGGTATGA CGAAAGTAGT AGAAGAAAAT GCTTTACAGG GTGCGTTATC ATTGGCTTTT CAGCATGATG ACGAAATACT GATTGAGAAA TGGCTGTGCG GTCCGGAATT TACGGTGGCG ATAGTTGGCG AAGAAATTTT ACCGTCAATT CGTATCCAAC CGGCAGGAAC CTTCTATGAT TATGAGGCGA AGTATCTCTC TGATGAGACT CAGTATTTCT GCCCTGCCGG TTTAGATGCG TCCCAGGAAG CCGCGCTACA GTCTCTCGTC CTGCAGGCAT GGAAAGCTTT AGGCTGCACG GGATGGGGGC GTATTGACGT CATGCTGGAC AGCGATGGTC AGTTTTATCT GCTGGAAGCC AATACTTCTC CGGGGATGAC CAGCCATAGT CTGGTGCCGA TGGCGGCGCG TCAGGCGGGA ATGAGCTTCT CGCAGTTAGT GGTACGAATT CTGGAGTTGG CGGACTGA
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Protein sequence | MADKIAVLLG GTSAERDVSL NSGAAVLAGL REGGIDAHPV DPQEVDVAQL KAMGFQKVFI ALHGRGVMAS ALSMDKLRSK LLWQGAGLPV APWVALTRAE FEKGLSEEQK ARISALGLPL IVKPSREGSS VGMTKVVEEN ALQGALSLAF QHDDEILIEK WLCGPEFTVA IVGEEILPSI RIQPAGTFYD YEAKYLSDET QYFCPAGLDA SQEAALQSLV LQAWKALGCT GWGRIDVMLD SDGQFYLLEA NTSPGMTSHS LVPMAARQAG MSFSQLVVRI LELAD
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