| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SeD_A0080 |
|---|
| Symbol | caiT |
|---|
| ID | 6872521 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011205 |
|---|
| Strand | - |
|---|
| Start bp | 86503 |
|---|
| End bp | 88020 |
|---|
| Gene Length | 1518 bp |
|---|
| Protein Length | 505 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 642783334 |
|---|
| Product | L-carnitine/gamma-butyrobetaine antiporter |
|---|
| Protein accession | YP_002214028 |
|---|
| Protein GI | 198245005 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1292] Choline-glycine betaine transporter |
|---|
| TIGRFAM ID | [TIGR00842] choline/carnitine/betaine transport |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.682648 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 67 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAATG AAAAGAAAAA ATCGGGAATT GAACCGAAGG TTTTTTTTCC GCCATTAATA
ATTGTCGGGA TACTTTGCTG GCTAACAGTC AGAGATCTTG ATGCCGCTAA CGTCGTTATT
AATGCGGTAT TCAGTTATGT CACCAACGTC TGGGGTTGGG CATTTGAATG GTATATGGTC
GTCATGCTCT TCGGCTGGTT CTGGCTGGTT TTTGGCCCCT ATGCCAAAAA GAGATTAGGT
GACGAAAAAC CGGAGTTTAG CACCGCCAGC TGGATTTTCA TGATGTTCGC CTCCTGTACA
TCCGCTGCGG TTCTGTTCTG GGGCTCTATT GAGATCTACT ACTATATCTC CACCCCGCCG
TTCGGCCTGG AACCAAATTC CACGGGCGCG AAAGAGATAG GCCTGGCGTA CAGCCTGTTC
CACTGGGGGC CGCTGCCGTG GGCAACCTAT AGCTTCCTTT CTGTGGCCTT CGCCTACTTC
TTCTTTGTAC GCAAGATGGA TGTCATCCGC CCCAGCTCCA CGCTGGTACC GCTCGTCGGT
GAAAAGCATG CGAAAGGGTT GTTCGGTACC ATCGTCGATA ACTTCTACCT GGTGGCGCTG
ATCTTCGCGA TGGGCACCAG CCTCGGTCTG GCTACCCCGC TGGTCACCGA GTGTATGCAA
TGGCTGTTCG GTATTCCGCA TACGCTGCAA TTGGATGCCA TCATCATTAC CTGCTGGATC
ATTCTGAACG CGATTTGCGT GGCCTGCGGC CTGCAAAAAG GGGTCAGAAT CGCCAGCGAT
GTGCGTAGCT ACCTGAGCTT CCTGATGCTC GGCTGGGTGT TTATCGTCAG CGGCGCCAGC
TTCATCATGA ACTACTTCAC CGACTCCGTC GGGATGCTGT TAATGCATCT GCCACGGATG
CTGTTCTATA CCGACGCCAT CGGTAAAGGC GGCTTCCCAC AGGGCTGGAC CGTTTTCTAC
TGGGCGTGGT GGGTTATATA CGCCATCCAG ATGAGTATCT TCCTGGCCCG TATTTCCCGT
GGTCGTACCG TACGTGAACT GTGCTTCGGG ATGGTGATGG GTCTGACCGC GTCTACCTGG
ATCCTGTGGA CAGTGCTGGG CAGCAACACG CTGCTGCTGA TGGATAAAAA CATCCTCAAC
ATTCCGCAAC TCATTGAGCA ACACGGCGTG GCGCGCGCCA TTATCGAAAC CTGGGCCGCC
TTGCCGCTCA GCACCGCCAC CATGTGGGGT TTCTTTATCC TCTGCTTTAT TGCCACCGTC
ACGCTGATTA ACGCCTGCTC TTACACCCTG GCGATGTCGA CCTGTCGTGA AGTTCGCGAT
GGTGAAGAGC CGCCTCTGTT AGTGCGTATC GGCTGGTCGG TGCTGGTCGG CATCATCGGT
ATCGTTCTGC TGGCGCTGGG TGGGTTGAAA CCGATTCAGA CCGCGATTAT CGCCGGAGGA
TGCCCGCTGT TCTTCGTCAA CATTATGGTG ACGCTGTCCT TTATTAAAGA CGCCAAAGTG
CACTGGAAAG ACAAGTAA
|
|---|
| Protein sequence | MKNEKKKSGI EPKVFFPPLI IVGILCWLTV RDLDAANVVI NAVFSYVTNV WGWAFEWYMV
VMLFGWFWLV FGPYAKKRLG DEKPEFSTAS WIFMMFASCT SAAVLFWGSI EIYYYISTPP
FGLEPNSTGA KEIGLAYSLF HWGPLPWATY SFLSVAFAYF FFVRKMDVIR PSSTLVPLVG
EKHAKGLFGT IVDNFYLVAL IFAMGTSLGL ATPLVTECMQ WLFGIPHTLQ LDAIIITCWI
ILNAICVACG LQKGVRIASD VRSYLSFLML GWVFIVSGAS FIMNYFTDSV GMLLMHLPRM
LFYTDAIGKG GFPQGWTVFY WAWWVIYAIQ MSIFLARISR GRTVRELCFG MVMGLTASTW
ILWTVLGSNT LLLMDKNILN IPQLIEQHGV ARAIIETWAA LPLSTATMWG FFILCFIATV
TLINACSYTL AMSTCREVRD GEEPPLLVRI GWSVLVGIIG IVLLALGGLK PIQTAIIAGG
CPLFFVNIMV TLSFIKDAKV HWKDK
|
|---|
| |