Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SeD_A0058 |
Symbol | |
ID | 6875205 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 |
Kingdom | Bacteria |
Replicon accession | NC_011205 |
Strand | - |
Start bp | 61792 |
End bp | 63450 |
Gene Length | 1659 bp |
Protein Length | 552 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 642783313 |
Product | sensor kinase DpiB |
Protein accession | YP_002214007 |
Protein GI | 198243185 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG3290] Signal transduction histidine kinase regulating citrate/malate metabolism |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.390736 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 59 |
Fosmid unclonability p-value | 0.361929 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCAAGAAA ATACCGTAAT TAAATATTTA AATACCAATA TGTTTATACG GGAAATTACA CGCTGGTTTG CCAGACACTC GTTTCAAAAC CGGATATTTC TACTGATCCT GTTTACATCC ACCATCGTGA TGCTGGCAAT CACCTGGTAT CTGACCGATA TCACGAAAGA ACGCCTGCAT TATCAGGTGG GCCAACGTGC GCTTATTCAG GCAATGCAAA TATCCGCTAT GCCAGAATTA GTTGAAGCCG TAGAAGCGCA TGATTTGTCA CGCATCAAAG CGTTGATTGA CCCAATGCGC TCGTTTTCGG ATGCGACTTA CATTACCGTT GGCAACGAAA AAGGTCAGCG ACTGTATCAC GTCAACCCGG ATGAGATCGG CAAATATATG GAGGGCGGCG ATAGCGACGA CGCGCTGTAT AACGCTAAAA GCTACGTATC GGTGCGCAAA GGTTCATTAG GCTCTTCCCT ACGTGGTAAA TCCCCGATTC AGGACAGTAC CGGTAAAGTC ATCGGTATTG TTTCCGTCGG CTATACTCTG GAACAGTTGG AGAGCTGGCT TAACTTACAA ATCAGCTCGT TGCTGTTCCC GATGGCGTTA CTGCTGCTGG TACTGTTGTA CTGTGCCCGC CGCTTCTCGC TGCATATTAA AAAGCAGATG CTTAACATGG AGCCGCAGCA GCTTTCACAA CTATTAATTC AGCAAAGCGT GTTGTTTGAG TCGGTATTTG AAGGGTTGAT CGCCATTGAC TCCCATCACC GTATTACCGC CATTAACCAA ACGGCTCGCC GCTTACTGAA TCTGAGCCAA CCGGAGTCTG AACTCATTGG CTATGCAATC CACCATGCCG TGTTGCCGGA GGCCTTCTTT TACGATGCGC CGCAAAAAAA CAAAAAAGAT GAGATCGTCA CCTTTAACCA AATGAAAGTC ATCGCCAGTC GCATGGCGGT CATTATTGAC AACCAGCCTC AGGGCTGGGT TATTAGCTTT CGCAACAAAG ACGATATCAA TACACTCAGC CTGCAGTTAA GTCAGGTGCG GCAATACGCC GATAACCTGC GCGCCGTGCA GCATGAGCAT CGCAACCTTA TTTCCACCAT TGCCGGACTG CTGTTCCTGA AGCGCTACGA TAATGCGCTG GCGCTGATTC AGCAGCAGTC GGAAAGCCAC CAGAAAGTAC TCGATTTTAT TTCCCATAAT TTCCGCGACC ACCACCTTGC GGGGCTATTA ATCGGTAAAT ATTATCGGGC AAAAGAGCTG GGGCTGGAGC TGATTTTCGA TCCTTCAAGC TTTGTTGAAC ACCTGCCGTC ATCGCTCTCG CATAATGAAT GGATTTCGAT TGTTGGCAGT TTATTGGACA ACGCCTATAA CGCCACCCTG CTCAATCGCG AAGGCTCGCG ACAGATTGAG TGCCTGATCA ACAGCGAAGG TAATGAAGTC ATTATTGAAG TTGCCGATCA GGGATGTGGT ATTGACGAAA ATATCCGCCA GCATATTTTC GAGCGTGGAG TGACCACCCA CAACAACGGC GATCATGGAA TTGGATTATG GTTGGTGCAC AGCTACGTCA AGCAGGCCAA TGGTGACATT ATCGTCGATA ACAATAATCC TTTTGGCACC ATTTTTACCC TCTATATCCC TTTTACCAGA GAAGAATAA
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Protein sequence | MQENTVIKYL NTNMFIREIT RWFARHSFQN RIFLLILFTS TIVMLAITWY LTDITKERLH YQVGQRALIQ AMQISAMPEL VEAVEAHDLS RIKALIDPMR SFSDATYITV GNEKGQRLYH VNPDEIGKYM EGGDSDDALY NAKSYVSVRK GSLGSSLRGK SPIQDSTGKV IGIVSVGYTL EQLESWLNLQ ISSLLFPMAL LLLVLLYCAR RFSLHIKKQM LNMEPQQLSQ LLIQQSVLFE SVFEGLIAID SHHRITAINQ TARRLLNLSQ PESELIGYAI HHAVLPEAFF YDAPQKNKKD EIVTFNQMKV IASRMAVIID NQPQGWVISF RNKDDINTLS LQLSQVRQYA DNLRAVQHEH RNLISTIAGL LFLKRYDNAL ALIQQQSESH QKVLDFISHN FRDHHLAGLL IGKYYRAKEL GLELIFDPSS FVEHLPSSLS HNEWISIVGS LLDNAYNATL LNREGSRQIE CLINSEGNEV IIEVADQGCG IDENIRQHIF ERGVTTHNNG DHGIGLWLVH SYVKQANGDI IVDNNNPFGT IFTLYIPFTR EE
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