Gene SeD_A0056 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeD_A0056 
Symbol 
ID6872866 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Dublin str. CT_02021853 
KingdomBacteria 
Replicon accessionNC_011205 
Strand
Start bp60162 
End bp61082 
Gene Length921 bp 
Protein Length306 aa 
Translation table11 
GC content57% 
IMG OID642783311 
Productribonucleoside hydrolase RihC 
Protein accessionYP_002214005 
Protein GI198242945 
COG category[F] Nucleotide transport and metabolism 
COG ID[COG1957] Inosine-uridine nucleoside N-ribohydrolase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.594312 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones58 
Fosmid unclonability p-value0.222927 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACAGCAT CCCTACACAT TATTCTTGAT ACCGATCCGG GCATTGATGA CGCGGCTGCG 
ATTGCCGCTG CGCTGTTCGC CCCCCAGCTT GATCTGCAAC TAATAACCAC CGTCGCAGGC
AATGTTTCCG TTGAAAAAAC GACCCGTAAT GCGTTGCAGC TTCTGCATTT CTGGAACAGC
GATATCCCAC TTGCCCAGGG GGCCGCGACA CCGCTGCTGC GTCCGTTACG CGATGCGGCA
TACGTCCACG GCGAATCCGG TATGGAAGGC TATGATTTTG TCGACCATCA GCGCCAACCG
TTGGCGAAGC CAGCGTTTAT CGCTATCCGG GATGTGCTGA TGAACGCCCC GGAGCCCATG
ACATTAGTGG CGATTGGGCC ATTGACCAAT ATTGCGTTGC TACTGATGCA CTATCCGGAG
TGTGCGTGTA ACATTCGCCG TCTGGTGTTG ATGGGCGGTT CCGCAGGGCG CGGCAATTTT
ACGCCTAATG CTGAATTTAA CATTGCTGTC GATCCGGAGG CCGCGGCGCT GGTGTTCCGC
AGCGGTCTGG AGATTGTGAT GTGTGGGCTT GATGTCACGA ATCAGGCAAT GCTCTCGCCA
GATTTTCTGA ATAAACTGCC TGCGCTGAAT CGCACCGGTA AGATGTTGCA CAGCCTGTTC
AACCATTATC GCAGCGGTAG TATGCGCACT GGCGTCCGGA TGCACGATCT CTGCGCTATC
GCCTGGCTGG TGCGTCCGGA GCTTTTTACC CTGCAATCCT GTTTTGTGGC CGTAGAAACG
CAGGGGCAAT ATACCGCCGG TACCACGGTG GTGGATATTG AAGGGCGTCT GGGGCAGCCC
GCCAACGCGC AGGTGGCGCT GGCGCTGGAT GTGGACGGTT TTCGTCAGTG GGTGGCTGAG
GTGTTTGCCT ATGCGCCGTA A
 
Protein sequence
MTASLHIILD TDPGIDDAAA IAAALFAPQL DLQLITTVAG NVSVEKTTRN ALQLLHFWNS 
DIPLAQGAAT PLLRPLRDAA YVHGESGMEG YDFVDHQRQP LAKPAFIAIR DVLMNAPEPM
TLVAIGPLTN IALLLMHYPE CACNIRRLVL MGGSAGRGNF TPNAEFNIAV DPEAAALVFR
SGLEIVMCGL DVTNQAMLSP DFLNKLPALN RTGKMLHSLF NHYRSGSMRT GVRMHDLCAI
AWLVRPELFT LQSCFVAVET QGQYTAGTTV VDIEGRLGQP ANAQVALALD VDGFRQWVAE
VFAYAP