Gene SeD_A0043 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeD_A0043 
SymbolnhaR 
ID6875233 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Dublin str. CT_02021853 
KingdomBacteria 
Replicon accessionNC_011205 
Strand+ 
Start bp47416 
End bp48315 
Gene Length900 bp 
Protein Length299 aa 
Translation table11 
GC content50% 
IMG OID642783301 
Producttranscriptional activator NhaR 
Protein accessionYP_002213995 
Protein GI198242822 
COG category[K] Transcription 
COG ID[COG0583] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones9 
Plasmid unclonability p-value0.73078 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones46 
Fosmid unclonability p-value0.00860797 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAGCATGT CTCATATTAA CTACAACCAT CTTTATTATT TCTGGCATGT CTATAAAGAA 
GGTTCTGTCG TGGGTGCCGC AGAGGCGCTT TTTCTGACGC CGCAAACCAT TACTGGTCAA 
ATTAAAGCCC TGGAAGAGCG TTTACAGGGG AAGCTATTTA AACGTAAGGG ACGCGGTCTT 
GAACCCAGCG AACTGGGCGA GCTGGTTTTT CGCTATGCGG ACAAAATGTT TACGCTAAGC 
CAGGAGATGC TGGATATCGT CAATTACCGC AAAGAATCAA ACCTGTTGTT TGATGTCGGA 
GTCGCCGATG CTTTATCCAA GCGTCTGGTC AGCAGCGTTC TGGATGCGGC GGTGGTGGTG 
GACGAACCCA TACATCTGCG TTGCTTCGAG TCCACGCACG AAATGTTGCT CGAACAGCTC 
AGCCAGCACA AGCTGGATAT GATTATCTCC GACTGCCCGA TAGATTCCAC GCAGCAGGAG 
GGGCTATTCT CAGTCAAAAT CGGCGAATGC AGCGTCAGTT TCTGGTGTAC GAATCCGCTT 
CCTGAAAAAG CGTTCCCTGC CTGCCTGGAA GAGCGACGGT TGCTGGTGCC GGGACGGCGC 
TCAATGCTGG GGCGTAAGTT GTTGAACTGG TTTAATTCAC AGGGGTTGCA GGTTGAGATC 
CTCGGTGAAT TTGATGATGC GGCCTTAATG AAGGCGTTTG GCGCGACGCA CGATGCGATT 
TTTGTGGCGC CGAGCCTTTA TTCGCTGGAT TTTTATGCCG ATGAGTCGGT AATAGAGATT 
GGGCGCGTGG AGAATGTCAT GGAAGAATAT CATGCGATTT TTGCCGAGAG AATGATCCAG 
CATCCGGCGG TGCAGCGTAT TTGCAATGCG GACTACTCGG CATTGTTTAA ACTACAGTAG
 
Protein sequence
MSMSHINYNH LYYFWHVYKE GSVVGAAEAL FLTPQTITGQ IKALEERLQG KLFKRKGRGL 
EPSELGELVF RYADKMFTLS QEMLDIVNYR KESNLLFDVG VADALSKRLV SSVLDAAVVV 
DEPIHLRCFE STHEMLLEQL SQHKLDMIIS DCPIDSTQQE GLFSVKIGEC SVSFWCTNPL 
PEKAFPACLE ERRLLVPGRR SMLGRKLLNW FNSQGLQVEI LGEFDDAALM KAFGATHDAI 
FVAPSLYSLD FYADESVIEI GRVENVMEEY HAIFAERMIQ HPAVQRICNA DYSALFKLQ