Gene SeD_A0023 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeD_A0023 
Symbol 
ID6871423 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Dublin str. CT_02021853 
KingdomBacteria 
Replicon accessionNC_011205 
Strand
Start bp24973 
End bp25800 
Gene Length828 bp 
Protein Length275 aa 
Translation table11 
GC content51% 
IMG OID642783283 
Productchaperone protein FimC 
Protein accessionYP_002213977 
Protein GI198242340 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG3121] P pilus assembly protein, chaperone PapD 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones56 
Fosmid unclonability p-value0.20078 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTTACCGC GACGGCGACA TTTAGCATGG TTTATTCCTG ATTCCTTATC GGGATTTTTT 
TCTCGTCTGT TGGGAGGCGA GAAAGGGGCG TTACGCGCGT CACTGCGCGT AACAAACCGA
CGGCATCAGG ATATTACGCA GATGAAAAAA AACGTACCGA TTTTCCTTCG ATTATTGCTA
CTGCTGTCGG CGGCCGGCCT GTCGTTTGCC GTGCAGGCGG GAGGCATTGC GCTGGGCGCG
ACCAGGGTGA TTTATCCGCA GGGAAGTAAG CAAACCTCCT TGCCGATTAT TAATTCTTCT
GCCAGCAATG TTTTTTTAAT TCAGTCATGG GTCGCCAATG CCGATGGTTC ACGCTCGACG
GATTTTATCA TTACGCCGCC TCTCTTTGTG ATCCAGCCTA AAAAAGAAAA TATATTACGT
ATTATGTATG TCGGGCCGTC ATTACCGACC GATCGCGAAA GCGTATTTTA TTTAAACAGT
AAAGCGATAC CCTCTGTCGA TAAAAATAAA TTGACCGGCA ACTCCCTGCA AATTGCGACG
CAAAGCGTGA TTAAGCTATT TATCCGCCCG AAAAATCTGG CGGAGGCGCC AGCTCATGCC
CCGTCGACGC TTCGCTGCCG TAACGAGCGC GGCCAGCTAA CGATTACTAA CCCTTCGCCG
TACTACGTTT CGATGGTTGA ACTGTACAGC GCGGGGAAAA AACTGCCGAA TACTATGGTA
CCGCCGAAAG GCGCGATCAC TCTCCCGGCG ACGCCCGGCC AGGTATCTTT GCGCACGGTA
AACGATTTTG GCGCAACGAC GCCAGCACGC GTTTGTCCAG CTTCATGA
 
Protein sequence
MLPRRRHLAW FIPDSLSGFF SRLLGGEKGA LRASLRVTNR RHQDITQMKK NVPIFLRLLL 
LLSAAGLSFA VQAGGIALGA TRVIYPQGSK QTSLPIINSS ASNVFLIQSW VANADGSRST
DFIITPPLFV IQPKKENILR IMYVGPSLPT DRESVFYLNS KAIPSVDKNK LTGNSLQIAT
QSVIKLFIRP KNLAEAPAHA PSTLRCRNER GQLTITNPSP YYVSMVELYS AGKKLPNTMV
PPKGAITLPA TPGQVSLRTV NDFGATTPAR VCPAS