Gene SeD_B0106 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeD_B0106 
Symbol 
ID6870922 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Dublin str. CT_02021853 
KingdomBacteria 
Replicon accessionNC_011204 
Strand- 
Start bp65074 
End bp66255 
Gene Length1182 bp 
Protein Length393 aa 
Translation table11 
GC content42% 
IMG OID642783242 
Productrelaxase/Mobilization nuclease domain protein 
Protein accessionYP_002213936 
Protein GI198241726 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.392069 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones90 
Fosmid unclonability p-value0.357718 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGGCGTTT ACGTTGATAA AGAATATCGT GTTAAACGAA AGTCATCAGA AAATGGTCGT 
AAGTCAGCTT TCGCTCATAA AGTCAAAAAT GGTGGAAAGA ACTATAGCCG CAATGTTCAG 
GAACGTATCA ACCGCAAGGG TGCCAGTAAG GAGGTTGTTG TCAAAATATC TGGAGGTGCT 
GTTACTCGTC AGGGGATTCG GAACAGTATT GATTATATGA GCCGTGAGTC AGAGCTACCA 
GTGATGAGTG AAAGCGGTCG GGTATGGACG GGTGCCGAAA TTCTGGAGGC TAAAGAGCAT 
ATGATAGATC GTGCTAATGA TCCTCAGCAT GTGATGAATG ATAAAGGTAA AGAAAATAAA 
AAAATCACAC AGAATATTGT CTTCTCGCCT CCAGTTTTAG CGAAAGTAAA GCCTGAAGAT 
TTGTTGGAGT CTGTCAGGAA AACGATGCAG AAAAAATATC CTAATCACCG TTTTGTTCTT 
GGATACCACT GTGACAAGAA AGAACATCCT CACGTTCATG TTGTTTTTCG TATCCGAGAT 
AATGACGGTA AACGCGCTGA TATCAGGAAA AAAGATTTAC GGGAAATTCG TACAGGTTTT 
TGTGAAGAGT TGAAGTTAAA AGGTTATGAC GTTAAAGCGA CCCATAAGCA ACAGCATGGA 
CTTAATCAGT CTGTTAAAGA TGCACATAAT ACAGCACCAA AAAGACAGAA AGGTGTTTAT 
GAGGTTGTTG ATGTTGGCTA CGACCATTAT CAGAACGATA AAACAAAGTC TAAGCAACAT 
TTTATAAAGC TAAAGACTCT TAACAAGGGG GTTGAGAAAA CATACTGGGG GGCTGATTTT 
GGGGACTTAT GTTCGCGGGA AAGCGTTAAA GCAGGTGATC TTGTCAGACT GAAGAAACTT 
GGTCAGAAAG AAGTAAAAAT CCCGGCGCTC GATAAAAACG GTGTTCAGCA TGGCTGGAAA 
ACGGTTCACA GAAATGAGTG GCAGTTAGAA AATCTGGGGG TTAAGGGCGT AGACAGAACA 
CCTTCAGCCA GCAAAGAGCT GGTACTGAAC AGCCCTGATA TGCTGTTGAA GCAACAACAG 
CGAATGGCGC AGTTTACGCA GCAGAAAGCA TCCACGTTAC AGTCAGAACA GAAGCTGAAA 
ACAGGGATTA AATTTTGGGG CTTTGGGGCT TATAAGATTT AA
 
Protein sequence
MGVYVDKEYR VKRKSSENGR KSAFAHKVKN GGKNYSRNVQ ERINRKGASK EVVVKISGGA 
VTRQGIRNSI DYMSRESELP VMSESGRVWT GAEILEAKEH MIDRANDPQH VMNDKGKENK 
KITQNIVFSP PVLAKVKPED LLESVRKTMQ KKYPNHRFVL GYHCDKKEHP HVHVVFRIRD 
NDGKRADIRK KDLREIRTGF CEELKLKGYD VKATHKQQHG LNQSVKDAHN TAPKRQKGVY 
EVVDVGYDHY QNDKTKSKQH FIKLKTLNKG VEKTYWGADF GDLCSRESVK AGDLVRLKKL 
GQKEVKIPAL DKNGVQHGWK TVHRNEWQLE NLGVKGVDRT PSASKELVLN SPDMLLKQQQ 
RMAQFTQQKA STLQSEQKLK TGIKFWGFGA YKI