Gene SeD_B0096 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeD_B0096 
Symbol 
ID6870850 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Dublin str. CT_02021853 
KingdomBacteria 
Replicon accessionNC_011204 
Strand
Start bp56310 
End bp57239 
Gene Length930 bp 
Protein Length309 aa 
Translation table11 
GC content48% 
IMG OID642783232 
Productpilx9 protein 
Protein accessionYP_002213926 
Protein GI198241736 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG3504] Type IV secretory pathway, VirB9 components 
TIGRFAM ID[TIGR02781] P-type conjugative transfer protein VirB9 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.164234 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones93 
Fosmid unclonability p-value0.522922 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAATGA ATAAAGGAGC GTTAATTATG GCGCTTCTGA TGGCGGCGCA CGTCTGTAAT 
GCTGCTGTTC TTCCTTCAGG CAGTCGCTTT GACCCACGCA ATCAGATAGT CAGTTATAAC
CCCAATAATA CCACCATAAT TAACAGTGCC GTTGGATACA CCACCACACT GGTATTTGAT
GAAGATGAAA CAGTTATCAG TGCCAGAACC GGTTTTCCGC AGGGATGGGC GGTTAATAAA
GAAGATAACC TGGTATACCT GGAAGTTCGT CCTGTTAAAC AAACTGTTCA GAAAAATAAT
ACGGATGCAA ACGGTAACAC CTCTTCTGAA TCCGTCAGTG TTGCTCTTGA CCCGGAAAAT
GAGCTTGAAC GCTGGCGAAT GAATCTGTTT GTTCGCACCA CGAAACGTAA TTACAGCATG
GAGCTGAACG CCAGAACGTT CCGACAGCCG GAGAAAATTG CGTTTGTGGT GAATTACCAG
TATCCGCAGG AACGCCGGAA GGAACAGGCC GAAATTGAGA AGAAACGCAC AGAGGCTCTT
GCCAGACGCC TGGAGGAACA GGCAATCAAC CGTTCCCTGG AAAATGCGAA ATCGCCCCGT
AACTGGCAGT ACTGGAAGCG GGTTGCTGAA GGCAGCCAGG ATATCAGCCC TGATTATGCA
TATGACGATG GTCGTTATAC CTGGTTCGGC TTCAGTCCGT TAAAGAAAAT TCCCAGCGTC
TTTGTGATGA ACGGTATGCA GGAGACTCTT ACCAATCCTG TGATTAAACA GAGCGGGAGT
TTTACGGCTG TTGGCGTACC GGTTGATAAG CGTTTTGTTT TACGTCTTGG TGAGCAGGTG
GTGGGGATTG AGAACCTGGG CTTCGGAAAA GTACGTTTAC CAGCCGGAGA TACGGTATCC
CCGGATGTTA AGAAAGAGGT GATCCAGTGA
 
Protein sequence
MKMNKGALIM ALLMAAHVCN AAVLPSGSRF DPRNQIVSYN PNNTTIINSA VGYTTTLVFD 
EDETVISART GFPQGWAVNK EDNLVYLEVR PVKQTVQKNN TDANGNTSSE SVSVALDPEN
ELERWRMNLF VRTTKRNYSM ELNARTFRQP EKIAFVVNYQ YPQERRKEQA EIEKKRTEAL
ARRLEEQAIN RSLENAKSPR NWQYWKRVAE GSQDISPDYA YDDGRYTWFG FSPLKKIPSV
FVMNGMQETL TNPVIKQSGS FTAVGVPVDK RFVLRLGEQV VGIENLGFGK VRLPAGDTVS
PDVKKEVIQ