| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SeD_B0077 |
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| Symbol | traI |
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| ID | 6870909 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011204 |
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| Strand | - |
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| Start bp | 39346 |
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| End bp | 43632 |
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| Gene Length | 4287 bp |
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| Protein Length | 1428 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 642783217 |
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| Product | conjugative transfer relaxase protein TraI |
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| Protein accession | YP_002213911 |
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| Protein GI | 198241643 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0507] ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member |
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| TIGRFAM ID | [TIGR02760] conjugative transfer relaxase protein TraI |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 89 |
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| Fosmid unclonability p-value | 0.850506 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCACCAGA AAGTAGATCG ACAGGAAAGG CATACCGACG TGCTGGCCAG AACGGTTGGC
ATGCTGCCGC CGGAAGCCGG CGTGATTGAG AAAGCCCGGG CCGGGATTGA TGAGGCCATC
AGCCGCGAGC GGCTTATCCC CCTCGACCGG GAGAAAGGAC TGTTCACCTC CGGTATTCAT
GTGCTCGATG AGCTGTCTGT CCGGGCACTC AGCAGCGATA TCATGAAGCA GAACCGGGTG
ACCGTCCATC CGGAGAAGAG CGTGCCCCGC ACGGGAAGTT ACAGCGACGC GGTGAGTGTC
TTGGCTCAGG ATCGCCCGTC ACTGGCCATT ATCAGTGGTC AGGGCAGTGC TGCCGGTCAG
CGGGAGCGGG TGGCGGAGCT GACGATGATG GCCCGGGAGC AGGGGCGTGA GGTGCAGATT
ATTGCCGCCG ACCGCCGTTC GCAGACGAAC CTGAAGCAGG ATGAACGTCT GTCCGGTGAG
CTGATAACCG GGCGTCGTCA GTTGCAGGAG GGCATGTCAT TTTCCCCGGG CAGTACCGTT
ATTGTCGACC AGGGCGAAAA GCTGTCCCTG AAGGAGACTC TGACCCTGCT GGATGGCGCG
GCGCGTCATA ACATCCAGGT GCTCATTACC GACAGCGGTC AGCGCACCGG TACCGGCAGC
GCGCTGATGG CCATGAAGGA GGCCGGCGTG AACAGTTACC GCTGGCAGGG CGGGCAGCAG
ACCCCGGCGA CCGTTATCAG CGAGCCGGAC CGGAATGTCC GCTATGCCCG GCTGGCCGGG
GATTTTGTGG CCGCGGTGAA AGCCGGGGAA GAGAGCGTGG CGCAGGTCAG CGGCGTGCGT
GAGCAGGCCA TACTGGCGGG GATGATACGC AGTGAGCTGA AGACGCAGGG GGTACTCGGG
CAGCAGGACA CCATGATGAC CGCGCTGTCA CCGGTCTGGC TGGACAGCCG GAACCGTTAC
CTGCGCGACA TGTACCGTGA AGGGATGGTG ATGGAGCAGT GGAACCCGGA GAAACGGTCC
CATGACCGGT ATGTGATTGA CCGGGTGACC GCACAAAGTC ACAGTCTGAC CCTGCGGGAT
GCGCAGGGAG AGACGCAGAT GGTGCGGATT TCAGCCCTGG ACAGCAGCTG GTCACTCTTC
CGGCCGGAGA AGATACCGGT GGCAGACGGC GAGCGTCTTA TGGTGACGGG AAAAATTCCC
GGGCTTCGCG TCTCCGGCGG CGACCGGCTG CAGGTATCAG CGGTGAACGA TGGCATGATG
ACGGTCATCG TTCCGGGACG GGCTGAGCCG GCTTCCCTGC CTGTGGGGGA TTCCCCGTTC
ACGGCGCTGA AGCTGGAAAA CGGCTGGGTG GAAACACCCG GGCATTCCGT CAGTGACAGT
GCGAAAGTTT TTGTTTCCGT CACACAGATG GCGATGGACA ACGCCACCCT GAACGGTCTG
GCCCGCAGCG GCCGGGATGT CCGGCTGTAT TCCTCACTGG ATGAGACCCG CACTGCTGAA
AAACTCTCCC GTCACCCGTC TTTTACGGTC GTTTCTGAGC AGATAAAGGC GCGTGCCGGT
GAGGTATCGC TGGAAACCGC CATCAGCCGC CAGAAAGCCG GGCTTCACAC GCCGGCACAG
CAGGCCATTC ACCTTGCCCT TCCGGTGGTG GAAAGTAAAA ACCTGGCATT CAGTCAGGTG
GAGCTGCTGA CGGAGGCGAA GTCGTTTGCT GCAGAGGGAA CCGGTTTTGC TGAACTGGGA
CGGGAAATTG ATGCGCAGAT AAAACGGGGC GATTTACTGC ATGTGGATGT GGCAAAAGGT
TATGGTACAG ACCTGCTGAT TTCCCGTGCA TCGTATGACG CTGAAAAGAG TATTCTGCAT
CATATCCTTG AGGGAAAGGA GGCGGTCACG CCACTGATGG AGAGGGTATC CGGCGAACTC
ATGGAGACTC TGACATCCGG ACAGCGTGCC GCCACCCGTA TGATACTCGA AACGAAAGAC
CGTTTCACCG TGGTACAGGG CTACGCCGGG GTGGGCAAGA CCACCCAGTT CCGGGCGGTG
ATGTCTGCCG TGAACCTACT GCCTGGGAGT GAGCGTCCCC GCGTCGTGGG GCTGGGGCCG
ACCCACAGGG CGGTCGGGGA GATGCGCAGT GCCGGCGTGG AAGCACAGAC GCTGGCGTCC
TTTCTGCATG ACACGCAGCT GCAGCAGCGC AGCGGTGAAA CACCGGATTT CAGCAACACG
CTGTTCCTCC TTGATGAGAG TTCGATGGTG GGCAACACCG ATATGGCGCG GGCATACGCC
CTGATTGCGG CCGGTGGTGG TCGTGCCGTG GCTAGTGGTG ACACGGACCA GCTGCAGGCC
ATCGCACCCG GTCAGCCTTT CCGTCTGCAG CAGACACGCA GTGCCGCCGA TGTGGCCATC
ATGAAAGAGA TTGTGCGCCA GACACCGGAA CTGCGGGACG CCGTGTACAG CCTGATTAAC
CGGGATGTGA ATAAGGCACT GTCCGGGCTT GAAAACGTGA AGCCGGTTCA GGTTCCCCGC
CTGAAGGGGG CATGGGTGCC GGAAAACTCG GTGACGGAGT TCAGCCGTCT GCAGGAGCGG
GAACTGGTGA AAGCCGCACA GGAGGCGGAG AAAAAGGGCG AAGCCTTTCC GGATGTGCCC
GTGACGCTGT ATGAGGCCAT TGTCCGCGAC TATACCGGCA GAACGCCGGA CGCCCGGGAG
CAGACGCTGA TTGTCACGCA TCTGAATGAG GATCGTCGGG TGCTGAACAG CATGATTCAG
GATGCACTGG CGAAACCGGG TGAGCAGCAG GTCACTGTCC CTGTACTGAC CACCGCGAAT
ATCCGTGACG GGGAGCTGCG CCGTCTGTCC ACCTGGGAGA ATCATCAGTG CGCGCTTGCC
CTGGTGGATA AAGTGTATCA CCGGATTGCC GGTATCAGTA AGGAGGACGG GCTGATAACC
CTGCAGGATG CCGACGGCAA CACGCGCCTG ATTTCCCCTC GGGAAGCAGC GGCAGAGGGC
GTCACACTGT ACAATCCGGA AACTATCCGG GTGGGGGCCG GTGACCGGAT GCGTTTCACG
AAGAGTGACA GGGAACGCGG GTATGTGGCC AACAGCGTCT GGCCGGTGAC CGCGGTTTCC
GGTGACGGTG TCACGCTGTC AGACGGGAAA CAGACCCGCG TGGTGCGTCC CGGGCAGGAC
AGGGCAGAGC AGCATATTGA CCTGGCGTAT GCCATCACCG CCCACGGTGC GCAGGGGGCC
AGTGAGACGT TTGCCATTGC GCTGGAGGGA ACCGAAGGGG GCCGGAAACA GATGGCCGGT
TTTGAGTCGG CGTATGTGGC CCTGTCGCGT ATGAAACAGC ATGTGCAGGT GTACACCGAC
GATCGTCAGG GCTGGACTGA TGCCATCAAC AGAGCCGCAC AGAAAGGTAC TGCCCACGAT
GTGCTGGAGC CGAAAGCAGA CCGGGAGGCC ATGAATGCAG AGCGGCTGTT CAGCACCGCC
CGGGAACTGC GGGACGTGGC CGCCGGCCGT GCCGTGCTGC GAAACGCCGG ACTGGCGCTG
GGAGACAGCC GGGCGCGTTT TATTGCACCG GGGCGCAAAT ATCCGCAGCC GTATGTGGCG
CTGCCGGCGT TTGACCGTAA CGGTAAATCC GCCGGTATCT GGCTGAACCC ACTGACAACG
GATGACGGTG CCGGGCTGCG GGGCTTCAGC GGTGAAGGAC GGGTGAAAGG CAGCGAAGAG
GCGCAGTTTG TGGCCCTGCA GGGCAGTCGT AACGGCGAAA GCCTGCTGGC TGATAACATG
CAGGAGGGCG TCCGGATTGC CCGCGATAAC CCTGACAGCG GCGTGGTGGT GAGAATTGCC
GGTGACGGGC GTCCGTGGAA TCCCGGCGCC ATTACCGGCG GCAGGGTGTG GGGCGATATT
CCTGACAGCA GTGTGCAACC CGGCGCGGTC AACGGGGAGC CGGTCACGGC AGAGATTCTG
GCACAGCGGC AGGCAGAAGA GGCAGTCCGC CGTGAAACAG AGCAGCGTGC CGCAGAGATT
GTCCGTAAAA TGGCTGAGGA TAAACCTGAC CTGCCGGAGG AGAAAACCGC GCAGGCGGTC
AGAGAGATTG CCGGCCAGGA GCAGGACAGA ATGACCCCGC CTGAACGGGA AACCCCGCTG
CCGGAGAGTG TGCTGCGCGA ACCGGTACGG GAGCGGGAGA CCATCCGGGA AGTGGCGCGG
GAAAACCGGG TTCGGGAGCG GCTGCAGCAG ACGGAGCAGG AGATGGTGCG TGACCTGCAG
AAAGAGAGAA CCCCGGACGG GGACTGA
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| Protein sequence | MHQKVDRQER HTDVLARTVG MLPPEAGVIE KARAGIDEAI SRERLIPLDR EKGLFTSGIH
VLDELSVRAL SSDIMKQNRV TVHPEKSVPR TGSYSDAVSV LAQDRPSLAI ISGQGSAAGQ
RERVAELTMM AREQGREVQI IAADRRSQTN LKQDERLSGE LITGRRQLQE GMSFSPGSTV
IVDQGEKLSL KETLTLLDGA ARHNIQVLIT DSGQRTGTGS ALMAMKEAGV NSYRWQGGQQ
TPATVISEPD RNVRYARLAG DFVAAVKAGE ESVAQVSGVR EQAILAGMIR SELKTQGVLG
QQDTMMTALS PVWLDSRNRY LRDMYREGMV MEQWNPEKRS HDRYVIDRVT AQSHSLTLRD
AQGETQMVRI SALDSSWSLF RPEKIPVADG ERLMVTGKIP GLRVSGGDRL QVSAVNDGMM
TVIVPGRAEP ASLPVGDSPF TALKLENGWV ETPGHSVSDS AKVFVSVTQM AMDNATLNGL
ARSGRDVRLY SSLDETRTAE KLSRHPSFTV VSEQIKARAG EVSLETAISR QKAGLHTPAQ
QAIHLALPVV ESKNLAFSQV ELLTEAKSFA AEGTGFAELG REIDAQIKRG DLLHVDVAKG
YGTDLLISRA SYDAEKSILH HILEGKEAVT PLMERVSGEL METLTSGQRA ATRMILETKD
RFTVVQGYAG VGKTTQFRAV MSAVNLLPGS ERPRVVGLGP THRAVGEMRS AGVEAQTLAS
FLHDTQLQQR SGETPDFSNT LFLLDESSMV GNTDMARAYA LIAAGGGRAV ASGDTDQLQA
IAPGQPFRLQ QTRSAADVAI MKEIVRQTPE LRDAVYSLIN RDVNKALSGL ENVKPVQVPR
LKGAWVPENS VTEFSRLQER ELVKAAQEAE KKGEAFPDVP VTLYEAIVRD YTGRTPDARE
QTLIVTHLNE DRRVLNSMIQ DALAKPGEQQ VTVPVLTTAN IRDGELRRLS TWENHQCALA
LVDKVYHRIA GISKEDGLIT LQDADGNTRL ISPREAAAEG VTLYNPETIR VGAGDRMRFT
KSDRERGYVA NSVWPVTAVS GDGVTLSDGK QTRVVRPGQD RAEQHIDLAY AITAHGAQGA
SETFAIALEG TEGGRKQMAG FESAYVALSR MKQHVQVYTD DRQGWTDAIN RAAQKGTAHD
VLEPKADREA MNAERLFSTA RELRDVAAGR AVLRNAGLAL GDSRARFIAP GRKYPQPYVA
LPAFDRNGKS AGIWLNPLTT DDGAGLRGFS GEGRVKGSEE AQFVALQGSR NGESLLADNM
QEGVRIARDN PDSGVVVRIA GDGRPWNPGA ITGGRVWGDI PDSSVQPGAV NGEPVTAEIL
AQRQAEEAVR RETEQRAAEI VRKMAEDKPD LPEEKTAQAV REIAGQEQDR MTPPERETPL
PESVLREPVR ERETIREVAR ENRVRERLQQ TEQEMVRDLQ KERTPDGD
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