Gene SeD_B0033 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeD_B0033 
Symbol 
ID6870875 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Dublin str. CT_02021853 
KingdomBacteria 
Replicon accessionNC_011204 
Strand- 
Start bp20687 
End bp21469 
Gene Length783 bp 
Protein Length260 aa 
Translation table11 
GC content60% 
IMG OID642783181 
ProductRsd 
Protein accessionYP_002213875 
Protein GI198241686 
COG category[L] Replication, recombination and repair 
COG ID[COG4974] Site-specific recombinase XerD 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones30 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones100 
Fosmid unclonability p-value0.945608 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGTCAGC CACCGTTACC TGCTGTCTGT ACGCAGGCAG CGTCCGCCCT GCTGCCGGTG 
GCCATTGATT ACCCGGCGGC CCTCGCACTG CGCCAGATGG CAATGCAGCA TGACGACTAC 
CCGAAATATC TGCTGGCTCC GGAGGTAAGT GCCCTGCTCC ACTACGTCCC TGATCTGCAT 
CGCAGGATGC TGCTGGCCAC TCTATGGAAT ACCGGCGCAC GGATTAACGA GGCGCTGGCC 
TTGACACGGG GAGACTTTTC GCTGGCACCA CCTTATCCGT TTGTGCAGCT GGCCACTCTG 
AAACAGCGGG CGGAAAAGGC GGCCAGAACG GCAGGACGGA TGCCGTCCGG CAGCCAGCCC 
CACCGCTTGG TGCCGCTTTC TGATAACCAG TATGTCAGCG AACTGCAGAT GATGGTGGCC 
ACGCTGAAAA TCCCGCTGGA GCGTCGTAAC AGACGTACCG GCAGAACGGA AAAGGCGCGC 
CTCTGGGAGA TCACCGACCG GACGGTCCGT ACCTGGATTG GGGAGGCGGT TGAGGCCGCA 
GCGGCTGACG ACGTGACGTT CTCAGTCCCG GTGACACCCC ATACATTCCG CCACTCCTAT 
GCGATGCACA TGCTGTACGC CGGCATACCG CTGAAGGTGC TGCAGGCGCT GATGGGACAC 
AAATCGGTGA GCTCGACGGA AGTGTACACG AAAGTGTTTG CGCTTGATGT TGCCGCACGA 
CACCGGGTGC AGTTTCAGAT GCCGGGTGCT GATGCAGTGG CTATGCTCAA AGGAGGTTCA 
TAG
 
Protein sequence
MSQPPLPAVC TQAASALLPV AIDYPAALAL RQMAMQHDDY PKYLLAPEVS ALLHYVPDLH 
RRMLLATLWN TGARINEALA LTRGDFSLAP PYPFVQLATL KQRAEKAART AGRMPSGSQP 
HRLVPLSDNQ YVSELQMMVA TLKIPLERRN RRTGRTEKAR LWEITDRTVR TWIGEAVEAA 
AADDVTFSVP VTPHTFRHSY AMHMLYAGIP LKVLQALMGH KSVSSTEVYT KVFALDVAAR 
HRVQFQMPGA DAVAMLKGGS