Gene SeAg_B4681 details

Gene Information

• Locus tag: SeAg_B4681
• Symbol: cpdB
• ID: 6793276
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Salmonella enterica subsp. enterica serovar Agona str. SL483
• Kingdom: Bacteria
• Replicon accession: NC_011149
• Strand: -
• Start bp: 4571892
• End bp: 4573835
• Gene Length: 1944 bp
• Protein Length: 647 aa
• Translation table: 11
• GC content: 52%
• IMG OID: 642778754
• Product: bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein
• Protein accession: YP_002149316
• Protein GI: 197251340
• COG category: [F] Nucleotide transport and metabolism
• COG ID: [COG0737] 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases
• TIGRFAM ID: [TIGR01390] 2',3'-cyclic-nucleotide 2'-phosphodiesterase

Plasmid Coverage information

• Num covering plasmid clones: 16
• Plasmid unclonability p-value: 0.11962
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGATTAAGT TTAGTGCAAC GCTTCTGGCT ACGCTGATCG CCGCCAGCGT GAATGCGGCC 
ACCGTCGATC TCCGTATCAT GGAAACTACT GATTTACATA GCAACATGAT GGATTTCGAT 
TATTACAAGG ATACCGCAAC CGAAAAATTC GGATTGGTAC GTACCGCAAG TTTGATTCAT 
GCCGCCCGAA ATGAAGTCAA AAACAGCGTG CTGGTGGATA ACGGCGACCT GATTCAGGGG 
AGCCCTCTGG GCGATTATAT GGCGGCAAAA GGGCTCAAAG ACGGTGACGT TCACCCGGTC 
TATAAAGCGC TCAACACTCT GGATTACGCG GTTGGAAACC TCGGCAACCA TGAGTTTAAT 
TATGGTCTGG ACTATCTGCA TAACGCGCTG GCTGGCGCGA AATTCCCTTA TGTTAACGCC 
AATATTATCG ACGTTAAAAC CCAAAAGCCG CTCTTTACGC CTTATCTGAT TAAAGAGACG 
AACGTTATTG ATAAAGACGG CAACCCGCAA ACCCTGAAAA TTGGCTATAT CGGCTTTGTC 
CCGCCGCAAA TCATGATTTG GGATAAAGCG AACCTGAGCG GCAAAGTTAC CGTCAATGAC 
ATTACGGAAA CCACCCGGAA ATATGTGCCC GAAATGCGCG AGAAAGGCGC AGATATCGTG 
GTAGTCATTG CTCATTCAGG CCTTTCTGCC GATCCGTACC ACAGCATGGC GGAAAACTCG 
GTTTATTACC TCAGCGAAGT TCCCGGCGTC GACGCGATTA TGTTTGGCCA CGCTCATGCC 
GTCTTCCCCG GTAAAGATTT TGCCGACATC AAAGGCGCGG ATATCGCCAA AGGTACGCTT 
AACGGCATTC CTGCGGTAAT GCCTGGCATG TGGGGCGACC ATCTGGGAGT GGTCGATCTG 
GTGCTCAATA ACGACAGCGG TAAATGGCAG GTTACGCAGG CGAAAGCGGA AGCGCGGCCT 
ATTTACGACG CCGCCGCTAA AACGTCGCTG GCAGCGGAAG ACAGTAAGCT GGTCGATATT 
CTGAAAGCCG ATCACGATGC CACCCGCGAG TTTGTCAGCA AGCCCATCGG TAAATCCGCC 
GATAACATGT ACAGTTATCT TGCTCTGGTG CAGGACGATC CTACCGTACA GGTGGTGAAT 
AACGCGCAAA AAGCGTATGT GGAACACTTT ATTCAGGGCG ATCCGGATCT GGCGAAACTG 
CCGGTGCTGT CCGCCGCCGC GCCGTTTAAA GTTGGCGGGC GTAAGAACGA TCCTGCCAGT 
TTTGTCGAAG TGGAAAAAGG CCAGTTGACC TTCCGTAACG CCGCCGATCT TTATCTCTAT 
CCGAATACGC TGGTGGTGGT GAAAGCCAGC GGCAAGGAGG TAAAAGAGTG GCTGGAATGT 
TCTGCCGGAC AGTTTAATCA AATTGATATT CACAGCAACA AACCGCAATC GTTGATCAAT 
TGGGATGACT TTCGCACCTA TAATTTCGAT GTCATTGACG GCGTGAATTA TCAAATCGAT 
GTGTCACAGC CCGCCCGCTA TGATGGCGAA TGCCAGATGG TGAATCCGCA GGCGGAACGT 
ATTAAAAACC TGACCTTTAA CGGTAAGCCT GTCGACCCGA ACGCTACGTT CCTGGTCGCC 
ACGAATAACT ATCGCGCTTA CGGCGGCAAG TTTGCCGGCA CGGGCGACAG CCATATCGCC 
TTTGCGTCTC CGGATGAAAA TCGCGCCGTG CTGGCGGCAT GGATTGGCGC AGAGTCAAAA 
CGCGCGGGCG AAATCCATCC GGCGGCGGAT AATAACTGGC GTCTGGCGCC AATCCACAGC 
GATACGGCGC TGGATATCCG CTTTGAAACA TCGCCAGGCG ATAAAGCCGC TGCCTTCATT 
AAAGCGAAAG GGCAGTATCC GATGAAGAAG GTTGCCGTCG ATGATATCGG TTTTGCCATT 
TATCAGGTGG ATTTAAGCAA GTAA 

 

Protein sequence

MIKFSATLLA TLIAASVNAA TVDLRIMETT DLHSNMMDFD YYKDTATEKF GLVRTASLIH 
AARNEVKNSV LVDNGDLIQG SPLGDYMAAK GLKDGDVHPV YKALNTLDYA VGNLGNHEFN 
YGLDYLHNAL AGAKFPYVNA NIIDVKTQKP LFTPYLIKET NVIDKDGNPQ TLKIGYIGFV 
PPQIMIWDKA NLSGKVTVND ITETTRKYVP EMREKGADIV VVIAHSGLSA DPYHSMAENS 
VYYLSEVPGV DAIMFGHAHA VFPGKDFADI KGADIAKGTL NGIPAVMPGM WGDHLGVVDL 
VLNNDSGKWQ VTQAKAEARP IYDAAAKTSL AAEDSKLVDI LKADHDATRE FVSKPIGKSA 
DNMYSYLALV QDDPTVQVVN NAQKAYVEHF IQGDPDLAKL PVLSAAAPFK VGGRKNDPAS 
FVEVEKGQLT FRNAADLYLY PNTLVVVKAS GKEVKEWLEC SAGQFNQIDI HSNKPQSLIN 
WDDFRTYNFD VIDGVNYQID VSQPARYDGE CQMVNPQAER IKNLTFNGKP VDPNATFLVA 
TNNYRAYGGK FAGTGDSHIA FASPDENRAV LAAWIGAESK RAGEIHPAAD NNWRLAPIHS 
DTALDIRFET SPGDKAAAFI KAKGQYPMKK VAVDDIGFAI YQVDLSK