Gene SeAg_B4042 details

Gene Information

• Locus tag: SeAg_B4042
• Symbol: ccmF
• ID: 6793722
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Salmonella enterica subsp. enterica serovar Agona str. SL483
• Kingdom: Bacteria
• Replicon accession: NC_011149
• Strand: -
• Start bp: 3938407
• End bp: 3940338
• Gene Length: 1932 bp
• Protein Length: 643 aa
• Translation table: 11
• GC content: 68%
• IMG OID: 642778158
• Product: cytochrome c-type biogenesis protein CcmF
• Protein accession: YP_002148752
• Protein GI: 197250344
• COG category: [O] Posttranslational modification, protein turnover, chaperones
• COG ID: [COG1138] Cytochrome c biogenesis factor
• TIGRFAM ID: [TIGR00353] c-type cytochrome biogenesis protein CcmF

Plasmid Coverage information

• Num covering plasmid clones: 46
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGATGCCTG AATACGGCCA CGCACTGCTG TGCCTGGCGC TCGGCGTGGC GCTGCTGCTG 
TCCGTTTACC CGCTGTGGGG CGTGGCGCGC GGCGACGCGC GGATGATGGC GTCGGCCGGG 
GTGTTCGCCT GGCTGCTGTT CATCTGCGTG GCGGGCGCGT TTTTCGTGCT GGTGCACGCC 
TTTGTGGTTA ACGACTTCAC CGTGGCCTAT GTCGCCGGCA ACTCGAACAC GCAGCTGCCG 
GTGTGGTACC GGGTGGCCGC CACCTGGGGG GCGCACGAGG GCTCGCTGCT GCTGTGGGTG 
CTGCTGATGA GCGGCTGGAC CCTGGCGGTG GCGGTGTTCA GCCGGCAGGT GCCGGCGGAT 
ATCGTCGCCC GGGTGCTGGC GGTGATGGGG ATGGTCTGCG CCGGTTTTCT GGTGTTCATC 
CTGTTCACCT CCGGCCCGTT CGCCCGCACG CTGCCGGCCT TTCCGGTAGA GGGGCGCGAC 
CTGAACCCGC TGCTGCAGGA CCCGGGGCTG ATTTTCCACC CGCCGCTGCT GTACATGGGC 
TATGTCGGCT TCTCGGTGGC CTTCGCCTTC GCCATCGCCG CGCTGCTGAG CGGGCGTCTG 
GACAGCGCGT TCACCCGTTT TGCCCGCCCG TGGACGCTGG CGGCGTGGGT GTTCCTGACG 
CTGGGCATCG TGCTCGGCTC GGCGTGGGCC TACTACGAGC TGGGCTGGGG CGGCTGGTGG 
TTCTGGGACC CGGTGGAGAA CGCCTCCTTT ATGCCGTGGC TGGCGGGCAC CGCCCTGCTG 
CACTCGCTGG CGGTCACGGA ACAGCGCGCC GGCTTCAAGG CGTGGACGCT GCTGCTGTCC 
ATCTGCGCCT TCTCGCTGTG CCTGCTGGGC ACCTTCCTGG TGCGCTCCGG GGTGCTGGTG 
TCGGTGCACG CCTTCGCCTC CGACCCGGCG CGCGGAATGT TTATCCTCGC CTTTATGGTG 
CTGGTCACCG GCGGCTCGCT GCTGCTGTTC GCCGTGCGCG GGCACAGGGT GCGTTCGCGG 
GTGAACAACA CGCTGTGGTC GCGCGAGTCG CTGCTGCTCG GCAACAACGT CCTGCTGATG 
GCCGCCATGC TGGTGGTGCT GCTGGGCACC CTGCTGCCGC TGGTGCACAA ACAGCTGGGG 
CTGGGCAGCA TTTCGGTGGG GGAGCCGTTC TTTAACACCA TGTTCACCTG GCTGATGGTC 
CCCTTTGCCC TGCTGCTGGG GGTGGGGCCT TTAGTGCGCT GGGGCCGGGA CCGGCCACGT 
AACATCAGGA AACTGCTGCT CACCGCCCTG GTCTCCACCC TGGTGCTGTC GGTACTTTTG 
CCATGGCTGC TGGAAGATAA AATCATCGCC ATGACGGTGG TGGGGATGGC GATGGCCTGC 
TGGATTGCGG TGCTGGCGGT TGCCGAAGCC GTACAGCGCG TGTCCCGCGG CACGAAAACC 
TCTCTCAGCT ACTGGGGAAT GGTGGCGGCG CACCTCGGGC TGGCGGTGAC GATTACCGGC 
ATCGCCTTCA GCCAGAATTA CAGCGTGGAG CGTGACGTGC GGATGCGGGC GGGCGACAGC 
GTGACCATTC ACGACTACCG CTTCACCTTC CGGGAGGTGC GGGACATCAC CGGCCCCAAC 
TACCGCGGCG GGGTGGCCCT CATCGGGGTG ACGCGCCACG GCGAGCCGGA GGCGGTGCTG 
CACGCGGAGA AACGGCTCTA CAACACCAGC CGGATGGTGA TGACCGAGGC GGCGATTGAC 
GGCGGGCTGA CCCGCGACCT GTACGCCGCG CTCGGGGAGG AGCTGGACAA CGGCGCGTGG 
GCCGTGCGCC TGTATTACAA ACCGTTTGTC CGCTGGATAT GGGCCGGGGG ACTGCTGATG 
GCGCTGGGCG GGCTGCTGTG CCTGGCGGAC CCGCGCTACC GCCGCCGTAA ACCATTGCCG 
GAGGCCGGAT GA 

 

Protein sequence

MMPEYGHALL CLALGVALLL SVYPLWGVAR GDARMMASAG VFAWLLFICV AGAFFVLVHA 
FVVNDFTVAY VAGNSNTQLP VWYRVAATWG AHEGSLLLWV LLMSGWTLAV AVFSRQVPAD 
IVARVLAVMG MVCAGFLVFI LFTSGPFART LPAFPVEGRD LNPLLQDPGL IFHPPLLYMG 
YVGFSVAFAF AIAALLSGRL DSAFTRFARP WTLAAWVFLT LGIVLGSAWA YYELGWGGWW 
FWDPVENASF MPWLAGTALL HSLAVTEQRA GFKAWTLLLS ICAFSLCLLG TFLVRSGVLV 
SVHAFASDPA RGMFILAFMV LVTGGSLLLF AVRGHRVRSR VNNTLWSRES LLLGNNVLLM 
AAMLVVLLGT LLPLVHKQLG LGSISVGEPF FNTMFTWLMV PFALLLGVGP LVRWGRDRPR 
NIRKLLLTAL VSTLVLSVLL PWLLEDKIIA MTVVGMAMAC WIAVLAVAEA VQRVSRGTKT 
SLSYWGMVAA HLGLAVTITG IAFSQNYSVE RDVRMRAGDS VTIHDYRFTF REVRDITGPN 
YRGGVALIGV TRHGEPEAVL HAEKRLYNTS RMVMTEAAID GGLTRDLYAA LGEELDNGAW 
AVRLYYKPFV RWIWAGGLLM ALGGLLCLAD PRYRRRKPLP EAG