Gene SeAg_B3887 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeAg_B3887 
Symbol 
ID6794104 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Agona str. SL483 
KingdomBacteria 
Replicon accessionNC_011149 
Strand+ 
Start bp3777787 
End bp3778773 
Gene Length987 bp 
Protein Length328 aa 
Translation table11 
GC content50% 
IMG OID642778007 
Producttrap transporter solute receptor, dctp family 
Protein accessionYP_002148602 
Protein GI197250691 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1638] TRAP-type C4-dicarboxylate transport system, periplasmic component 
TIGRFAM ID[TIGR00787] tripartite ATP-independent periplasmic transporter solute receptor, DctP family 


Plasmid Coverage information

Num covering plasmid clones35 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAATTAC ACGTTATTGC TCGTTCATTA TTGATAGCTG GTCTGACGGT TTTCAGCGTG 
TCGTCTCTGG CGGCGCAATC TTTACGTTTT GGTTATGAAA CACCGCAAAC TGACTCCCAA 
CATATTGCCG CGAAAAAATT TAACGAACTA TTAAAAGAAA AAACTAACGG CGAATTAACG 
CTAAAACTCT TTCCTGACAG CACATTAGGT AACGCCCAGG CAATGATCAG CGGGGTGCGC 
GGCGGAACCA TTGATATGGA AATGTCCGGT TCGAACAATT TCACCGGCCT GGCCCCTGTA 
TTCAACTTAC TTGATGTCCC CTTCCTGTTT CGCGATACCG CGCATGCGCA TAAAACGCTC 
GACGGCAAAG TCGGCGATGA ACTGAAAAAA TCACTCGATT CAAAAGGGTT AAAAGTGCTG 
GCCTACTGGG AAAACGGCTG GCGCGACGTC ACCAACTCCC GCGCGCCGGT AAAAACGCCG 
GGCGATTTGA AAGGCTTAAA AATCCGCACT AACAACAGCC CAATGAATAT CGCGGCCTTT 
AAAATCTTCG GCGCGAACCC TATTCCGATG CCATTCTCCG AAGTCTATAC CGGCCTCGAA 
ACCCGTACGA TTGATGCCCA GGAACACCCT ATCAACGTCG TGTGGTCAGC GAAATTCTAT 
GAGGTACAGA AATACCTCTC CCTCACTCAT CACGCCTATT CGCCTCTGCT GCTGGTGATC 
AATAAAGCCA AATTCGACGC TTTAAGCCCG CAGTTCCAGG AGGCACTGCT GAGTTCCGCC 
AAAGAAGCGG GTGACTATCA GCGCAAACTG GTCGCCGAAG ATCAGCAAAA AATTATCGAT 
GGCATGAAAG AAGCCGGAGT TGAAGTCCTG ACCGATATCG ACCGTAAAGC CTTCAGCGAT 
GCGCTGGGCA GCCAGGTGCG CGATATGTTC CTGAAAGACA ACCCGCAGGG CGCCGATCTC 
CTGAAAGCCG TGGACGAGGT GCAATAA
 
Protein sequence
MKLHVIARSL LIAGLTVFSV SSLAAQSLRF GYETPQTDSQ HIAAKKFNEL LKEKTNGELT 
LKLFPDSTLG NAQAMISGVR GGTIDMEMSG SNNFTGLAPV FNLLDVPFLF RDTAHAHKTL 
DGKVGDELKK SLDSKGLKVL AYWENGWRDV TNSRAPVKTP GDLKGLKIRT NNSPMNIAAF 
KIFGANPIPM PFSEVYTGLE TRTIDAQEHP INVVWSAKFY EVQKYLSLTH HAYSPLLLVI 
NKAKFDALSP QFQEALLSSA KEAGDYQRKL VAEDQQKIID GMKEAGVEVL TDIDRKAFSD 
ALGSQVRDMF LKDNPQGADL LKAVDEVQ