Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SeAg_B3770 |
Symbol | rpoH |
ID | 6795506 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Agona str. SL483 |
Kingdom | Bacteria |
Replicon accession | NC_011149 |
Strand | - |
Start bp | 3653193 |
End bp | 3654047 |
Gene Length | 855 bp |
Protein Length | 284 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 642777895 |
Product | RNA polymerase factor sigma-32 |
Protein accession | YP_002148491 |
Protein GI | 197250526 |
COG category | [K] Transcription |
COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
TIGRFAM ID | [TIGR02392] alternative sigma factor RpoH [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
Num covering plasmid clones | 49 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACCAAAG AAATGCAAAA TTTAGCTTTA GCCCCTGTTG GCAACCTGGA ATCTTATATC CGGGCGGCGA ACGCGTGGCC GATGTTATCG GCTGACGAGG AGCGGGCATT GGCTGAAAGG CTGCATTACC AGGGCGATCT GGAAGCAGCT AAAACGCTGA TCCTGTCTCA CCTGCGCTTT GTTGTTCATA TTGCTCGTAA CTATGCGGGC TATGGTCTGC CGCAGGCGGA TTTGATCCAG GAAGGCAACA TCGGCCTGAT GAAAGCCGTA CGTCGTTTTA ACCCGGAAGT AGGCGTGCGC CTGGTTTCCT TCGCCGTACA CTGGATTAAA GCAGAAATTC ACGAATACGT GCTGCGTAAC TGGCGTATCG TTAAAGTCGC AACCACGAAA GCGCAGCGTA AGCTGTTCTT TAATCTGCGT AAAACCAAGC AGCGTCTGGG CTGGTTTAAT CAGGATGAGG TTGAAATGGT GGCGCGCGAA CTGGGTGTTT CCAGTAAAGA CGTGCGTGAG ATGGAGTCGC GTATGGCGGC GCAGGACATG ACGTTTGACA TGTCTTCGGA CGATGAGTCC GACAGCCAGC CAATGGCGCC GGTGCTGTAT CTGCAGGATA AATCGTCTAA CTTTGCCGAC GGCATTGAAG ACGATAACTG GGAAGAGCAG GCCGCCAACC GACTGACCGA CGCGATGCAG GGGCTCGACG AGCGTAGCCA GGATATTATC CGCGCTCGCT GGCTGGACGA AGACAATAAG TCTACGTTGC AGGAGCTGGC CGATCGTTAC GGCGTCTCCG CTGAGCGTGT GCGCCAGCTT GAAAAGAACG CCATGAAAAA GCTTCGCGCT GCGATCGAAG CGTAA
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Protein sequence | MTKEMQNLAL APVGNLESYI RAANAWPMLS ADEERALAER LHYQGDLEAA KTLILSHLRF VVHIARNYAG YGLPQADLIQ EGNIGLMKAV RRFNPEVGVR LVSFAVHWIK AEIHEYVLRN WRIVKVATTK AQRKLFFNLR KTKQRLGWFN QDEVEMVARE LGVSSKDVRE MESRMAAQDM TFDMSSDDES DSQPMAPVLY LQDKSSNFAD GIEDDNWEEQ AANRLTDAMQ GLDERSQDII RARWLDEDNK STLQELADRY GVSAERVRQL EKNAMKKLRA AIEA
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