| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SeAg_B3687 |
|---|
| Symbol | hofQ |
|---|
| ID | 6792887 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salmonella enterica subsp. enterica serovar Agona str. SL483 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011149 |
|---|
| Strand | - |
|---|
| Start bp | 3559848 |
|---|
| End bp | 3561017 |
|---|
| Gene Length | 1170 bp |
|---|
| Protein Length | 389 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 642777813 |
|---|
| Product | outer membrane porin HofQ |
|---|
| Protein accession | YP_002148409 |
|---|
| Protein GI | 197248588 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG4796] Type II secretory pathway, component HofQ |
|---|
| TIGRFAM ID | [TIGR02515] type IV pilus secretin (or competence protein) PilQ |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.00260345 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGACGCTGG TGGTTGACGA CGTCCCTGTG GTGCAGGTTT TGCAGACTTT AGCCGAGCAG
GAGCGGCAGA ATCTGGTGGT GTCGCCGGAC GTCAGCGGGA CATTATCGCT ACATCTGACG
GATGTGCCGT GGAAACAGGC GCTACAGACG GTGGTCAATA GCGCGGGGCT GGTGCTGCGT
CAGGAGGGGA ATATTCTCCA TGTTCATTCA CAGGCCTGGC AGAAAGAACA CAGTGCGCGG
CAGGATGCCG AGCGGTTAAG GCTTCAGGCT AATTTACCGC TGGAAAACCG CAGCATTAGC
CTGCAATACG CCGATGCCGG CGAACTGGCG AAAGCGGGCG AGAAACTCCT GAGCGCGAAG
GGAACCATCA TGGTAGATAA GCGCACCAAC CGCCTGCTGT TGCGCGATAA CCGCGCGGCC
CTGGCGGAGC TGGAAAAATG GGTATCGCAA ATGGATCTGC CGGTGGCGCA GGTGGAGCTG
GCGGCGCATA TCGTCACCAT TAACGAAAAG AGTCTACGGG AACTGGGCGT AAAGTGGACG
CTGGCTGACG CGACGCAAGC GGGCGCGGTG GGTGACGTGA CGACGCTTTC CAGTGATTTA
TCCGTCGCCG CCGCCACCTC ACGCGTCGGG TTTAACATCG GGCGCATTAA CGGACGCTTG
CTGGATCTGG AGCTGTCAGC GCTGGAGCAA AAGCAGCAGT TGGATATTAT CGCCAGCCCC
CGGCTGCTGG CTTCCCATCT GCAGCCAGCC AGTATCAAGC AAGGCAGCGA AATTCCTTAT
CAGGTTTCCA GCGGCGAAAG CGGCGCGACC TCCGTGGAAT TTAAAGAAGC GGTGCTGGGA
ATGGAGGTGA CGCCCACCGT TTTGCAAAAA GGGCGCATCC GCCTGAAGTT ACATATCAGC
CAGAATGTCC CCGGTCAGGT ACTACAACAG GCTGACGGCG AAGTGCTGGC GATAGATAAA
CAGGAAATTG AAACGCAGGT AGAGGTAAAA AGCGGCGAGA CGCTGGCGCT GGGCGGTATT
TTTTCGCGAA AAAATAAATC GGGTAGCGAT AGCGTGCCGC TGTTGGGGGA TATTCCCTGG
CTTGGTCAGC TCTTCCGCCA TGACGGCAAA GAGGACGAGC GACGCGAATT AGTGGTGTTT
ATCACCCCCA GACTGGTGGC GACAGAATAA
|
|---|
| Protein sequence | MTLVVDDVPV VQVLQTLAEQ ERQNLVVSPD VSGTLSLHLT DVPWKQALQT VVNSAGLVLR
QEGNILHVHS QAWQKEHSAR QDAERLRLQA NLPLENRSIS LQYADAGELA KAGEKLLSAK
GTIMVDKRTN RLLLRDNRAA LAELEKWVSQ MDLPVAQVEL AAHIVTINEK SLRELGVKWT
LADATQAGAV GDVTTLSSDL SVAAATSRVG FNIGRINGRL LDLELSALEQ KQQLDIIASP
RLLASHLQPA SIKQGSEIPY QVSSGESGAT SVEFKEAVLG MEVTPTVLQK GRIRLKLHIS
QNVPGQVLQQ ADGEVLAIDK QEIETQVEVK SGETLALGGI FSRKNKSGSD SVPLLGDIPW
LGQLFRHDGK EDERRELVVF ITPRLVATE
|
|---|
| |