Gene SeAg_B3566 details

Gene Information

• Locus tag: SeAg_B3566
• ID: 6794254
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Salmonella enterica subsp. enterica serovar Agona str. SL483
• Kingdom: Bacteria
• Replicon accession: NC_011149
• Strand: -
• Start bp: 3461168
• End bp: 3463108
• Gene Length: 1941 bp
• Protein Length: 646 aa
• Translation table: 11
• GC content: 54%
• IMG OID: 642777697
• Product: regulatory protein CsrD
• Protein accession: YP_002148299
• Protein GI: 197251154
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG2200] FOG: EAL domain
• TIGRFAM ID: [TIGR00254] diguanylate cyclase (GGDEF) domain

Plasmid Coverage information

• Num covering plasmid clones: 7
• Plasmid unclonability p-value: 0.0000976452
• Plasmid hitchhiking: No
• Plasmid clonability: decreased coverage

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCGATTAA CGACGAAATT CTCAGCTTTT ATCACGCTGC TCACGGGGTT AACGATCTTC 
GTGACTCTGA TAGGTTGCTC GCTAAGCTTT TATAACGCCG TACAGTATAA GTATGTCAGC 
CGTGTGCAGG CGACGGCGAC AGCCATTGAT ACGCACCTGG TGACCCATGA TATTGTCTCG 
CTGACGCCGC AAATCGACGA ACTCATGATC GCTTCCGATA TTGTGCGTGT CGATCTGTTG 
CAGGGGGAGC GCAGCGTCTA CAGCCATTCT CGCGCCAGAG GTTATCGGCC AGCCGGCACC 
AGCGACATGT ATCGCGAGCT GGTCGTACCG CTGATAAAAC ATCCAGGAAT GTCGCTACGT 
CTGGTTTACC AGGACCCGAT GGGTAACTAT TTTCACTCAC TGATCACCAC GGCGCCGCTG 
ACGCTGGCGA TCGGTTTTAT CGTTCTGATT TTGTTTTTAT CGGTGCGCTG GCTGCAGCGG 
CAGCTTTCCG GGCAAGAGCT TCTGGAAATT CGCTCAACGC GTATTCTGAA CGGCGAACGC 
GGGGCGAATG TCCGCGGTTC TGTTTACGAA TGGCCGGCGC GCACCAGTAG CGCGCTTGAT 
GTATTGCTTT CCGAAATTCA GTTTGCTCAC GAACAGCGTA GTCGCCTGGA CACCCTCATT 
CGCTCCTACG CCGCGCAGGA CACCAAAACC GGACTCGGTA ACCGACTGTT CTTTGATAAC 
CAGCTGGCGA CGCTGCTGGA AGATCAGGAA AAAGTGGGAG TGCATGGCGT GGTGATGATG 
ATCCGCTTGC CAGACTTCAA TCTTCTGCGC GACAGCTTGG GAGGCAATCA GGCGGAAGAG 
CAGATGTTTA TGCTTATCAA TCTGCTATCG ACATTTATTA TGCGTTACCC AGGCTCGCTG 
CTGGCGCGTT ATCACCGCAG CGACTTTGCC GTGCTGCTAC CGCATCGAAC GCTGAAAGAA 
GCGGAAAGTA TTGCCGGACA ACTTTTAAAA GCTGTCGATG CGCTACCGGC TAACAAAATG 
CTCGATCGTG ACGATATGGT ACATATCGGC ATTTGCGCCT GGCGCAGCGG ACAGTCCACC 
GAGCAGGTGA TGGAACATGC TGAAGCCGCG GCACGGAATG CCGCCCTGCA GGGGGGAAAT 
AGCTGGGCTA TCTACGACGA CACTCTGCCG GAAAAAGGGC GCGGCAATGT GCGCTGGCGC 
ACATTGATTG AGCAGATGCT GAACCGGGGC GGACCGCGAC TTTATCAAAA ACCGGCGGTC 
ACGCGAGAAG GTCGCGTACA TCATCGGGAA TTGATGTGTC GCATCTATGA CGGTAAAGAA 
GAGGTGAGCT CGGCGGAGTA TATGCCGATG GTGTTGCAAT TTGGTTTATC GGAAGAGTAT 
GACAGATTAC AAATTAGCCG CCTGATTACG TTGCTGGGCT ACTGGCCGGA TGAAAATCTG 
GCAATGCAGT TGACGGTTGA GTCGCTGATT CGTCCGCGTT TTCAGCGCTG GTTGCGCGAT 
ACGTTAATGC AGTGTGAAAA ATCACAGCGA AATCGCATAA TTATTGAACT TGCGGAGGCA 
GATGTTTGTC AACACATCAG CCGGTTACAA CCCATCCTTC GCTTAGTTAA TGCGCTTGGC 
GTTCGGGTGG CGGTGACACA GGCGGGTTTG ACGCTGGTTA GCACGAGCTG GATTAAAGCG 
CTCAATGTGG AATTACTCAA GCTGCATCCG AGTCTGGTCA GAAACATTGA GAAGCGAACG 
GAAAACCAGC TTCTGGTTCA AAGTCTGGTA GAGGCCTGCG CGGGCACGCC TACGCAGGTT 
TACGCGACGG GCGTCCGTTC GCGCGGCGAG TGGCAGACGC TGACAAAACG CGGCGTGGCT 
GGCGGGCAGG GTGATTTTTT TGCCTCCTCC CAACTACTTG ACACAAACGT GAAAAAATAT 
TCGCAAAGAT ACTCGGTTTA A 

 

Protein sequence

MRLTTKFSAF ITLLTGLTIF VTLIGCSLSF YNAVQYKYVS RVQATATAID THLVTHDIVS 
LTPQIDELMI ASDIVRVDLL QGERSVYSHS RARGYRPAGT SDMYRELVVP LIKHPGMSLR 
LVYQDPMGNY FHSLITTAPL TLAIGFIVLI LFLSVRWLQR QLSGQELLEI RSTRILNGER 
GANVRGSVYE WPARTSSALD VLLSEIQFAH EQRSRLDTLI RSYAAQDTKT GLGNRLFFDN 
QLATLLEDQE KVGVHGVVMM IRLPDFNLLR DSLGGNQAEE QMFMLINLLS TFIMRYPGSL 
LARYHRSDFA VLLPHRTLKE AESIAGQLLK AVDALPANKM LDRDDMVHIG ICAWRSGQST 
EQVMEHAEAA ARNAALQGGN SWAIYDDTLP EKGRGNVRWR TLIEQMLNRG GPRLYQKPAV 
TREGRVHHRE LMCRIYDGKE EVSSAEYMPM VLQFGLSEEY DRLQISRLIT LLGYWPDENL 
AMQLTVESLI RPRFQRWLRD TLMQCEKSQR NRIIIELAEA DVCQHISRLQ PILRLVNALG 
VRVAVTQAGL TLVSTSWIKA LNVELLKLHP SLVRNIEKRT ENQLLVQSLV EACAGTPTQV 
YATGVRSRGE WQTLTKRGVA GGQGDFFASS QLLDTNVKKY SQRYSV