| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SeAg_B2932 |
|---|
| Symbol | emrB |
|---|
| ID | 6792607 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salmonella enterica subsp. enterica serovar Agona str. SL483 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011149 |
|---|
| Strand | + |
|---|
| Start bp | 2871628 |
|---|
| End bp | 2873166 |
|---|
| Gene Length | 1539 bp |
|---|
| Protein Length | 512 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 642777101 |
|---|
| Product | multidrug resistance protein B |
|---|
| Protein accession | YP_002147715 |
|---|
| Protein GI | 197248872 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | [TIGR00711] drug resistance transporter, EmrB/QacA subfamily |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.576129 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAACAGC AAAAACCGCT GGAGGGCGCG CAGCTCGTCA TCATGACGAT CGCGCTGTCG
CTGGCGACAT TCATGCAGGT GCTGGACTCC ACCATTGCCA ACGTGGCGAT TCCGACCATC
GCCGGGAACC TGGGTTCTTC CCTAAGCCAG GGGACATGGG TTATCACCTC TTTCGGGGTG
GCGAACGCTA TCTCGATTCC CTTAACCGGC TGGCTGGCGA AACGTTTTGG CGAAGTCAAA
CTGTTCATGT GGTCGACGGT CGCCTTTGCC GCGGCCTCCT GGGCCTGTGG CGTATCCAGC
AGCCTGAATA TGCTGATCTT CTTCCGCGTG GTGCAGGGCG TGGTCGCCGG GCCGCTGATT
CCGCTCTCGC AAAGCCTGTT GCTGAATAAC TATCCGCCTG CAAAGCGCTC CATTGCGCTG
GCGCTCTGGT CAATGACCGT CATTGTCGCG CCGATTTGCG GCCCGATTCT GGGGGGCTAC
ATCAGTGATA ATTACCACTG GGGATGGATT TTCTTCATCA ACGTGCCGAT TGGCATCGCC
GTCGTCCTGA TGACGTTACA CACGCTGCGC GGACGTGAAA CGCATACCGA ACGGCGACGT
ATTGACGCCG TCGGGCTGGC GTTACTGGTG ATTGGCATCG GCAGCCTGCA AATTATGCTC
GACCGCGGTA AAGAGCTGGA CTGGTTCTCC TCGCAGGAAA TTATCATCCT GACCGTGGTC
GCCGTCATCG CCATCAGTTT CCTGATCGTC TGGGAACTGA CCGACGATCA CCCTATCGTC
GATCTTTCTC TTTTTAAATC GCGTAACTTC ACGATTGGCT GCCTGTGCAT CAGCCTTGCC
TATATGCTCT ATTTCGGCGC CATTGTTCTA CTGCCGCAGC TTTTGCAAGA GGTGTACGGC
TATACCGCAA CGTGGGCAGG TCTGGCGTCG GCGCCAGTCG GCATTATTCC GGTAATTTTG
TCGCCGATTA TCGGACGCTT CGCGCATAAA CTGGATATGC GCAGGCTGGT CACGTTCAGC
TTCATTATGT ACGCCGTCTG TTTTTACTGG CGCGCCTGGA CGTTCGAACC GGATATGGAT
TTCGGCGCTT CCGCATGGCC GCAGTTTATT CAGGGATTTG CCGTCGCCTG CTTCTTTATG
CCGCTGACCA CCATTACGCT CTCCGGGTTA CCGCCAGAAC GGCTGGCAGC GGCATCAAGC
CTGTCGAACT TCACGCGAAC GCTGGCAGGT TCAATTGGCA CCTCGATTAC CACCACTATG
TGGACCGATC GTGAGTCGCT ACACCATGCT CAGCTCACGG AGTCGGTTAC GGCGTATAAT
CCAAACGCTC AGGCTATGTA CGATAAACTG GAAGGCTTAG GGATGACGCA CCAACAGGCG
TCAGGCTGGA TAGCCCAGCA AATCACGAAT CAGGGGCTGA TTATTTCCGC CAACGAAATC
TTCTGGATGT CGGCGGGGAT CTTCCTGGTG CTGCTCGGCC TGGTGTGGTT CGCCAAACCG
CCCTTCGGTG CGGGCGGCGG CGGTGGCGGC GCGCACTAA
|
|---|
| Protein sequence | MQQQKPLEGA QLVIMTIALS LATFMQVLDS TIANVAIPTI AGNLGSSLSQ GTWVITSFGV
ANAISIPLTG WLAKRFGEVK LFMWSTVAFA AASWACGVSS SLNMLIFFRV VQGVVAGPLI
PLSQSLLLNN YPPAKRSIAL ALWSMTVIVA PICGPILGGY ISDNYHWGWI FFINVPIGIA
VVLMTLHTLR GRETHTERRR IDAVGLALLV IGIGSLQIML DRGKELDWFS SQEIIILTVV
AVIAISFLIV WELTDDHPIV DLSLFKSRNF TIGCLCISLA YMLYFGAIVL LPQLLQEVYG
YTATWAGLAS APVGIIPVIL SPIIGRFAHK LDMRRLVTFS FIMYAVCFYW RAWTFEPDMD
FGASAWPQFI QGFAVACFFM PLTTITLSGL PPERLAAASS LSNFTRTLAG SIGTSITTTM
WTDRESLHHA QLTESVTAYN PNAQAMYDKL EGLGMTHQQA SGWIAQQITN QGLIISANEI
FWMSAGIFLV LLGLVWFAKP PFGAGGGGGG AH
|
|---|
| |