Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SeAg_B2384 |
Symbol | ccmF |
ID | 6794660 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Agona str. SL483 |
Kingdom | Bacteria |
Replicon accession | NC_011149 |
Strand | - |
Start bp | 2300470 |
End bp | 2302401 |
Gene Length | 1932 bp |
Protein Length | 643 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 642776583 |
Product | cytochrome c-type biogenesis protein CcmF |
Protein accession | YP_002147207 |
Protein GI | 197247535 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG1138] Cytochrome c biogenesis factor |
TIGRFAM ID | [TIGR00353] c-type cytochrome biogenesis protein CcmF |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 32 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGATGCCTG AATACGGCCA CGCGCTGCTG TGCCTGGCGC TCGGCGTGGC GCTGCTGCTG TCCGTTTACC CGCTGTGGGG CGTGGCGCGC GGCGACGCGC GGATGATGGC GTCGGCCGGG GTGTTCGCCT GGCTGCTGTT CATCTGCGTG GCGGGCGCGT TTTTCGTGCT GGTGCACGCC TTTGTGGTTA ACGACTTCAC CGTGGCCTAT GTCGCCGGCA ACTCGAACAC GCAGCTGCCG GTGTGGTACC GGGTGGCCGC CACCTGGGGG GCGCACGAGG GCTCGCTGCT GCTGTGGGTG CTGCTGATGA GCGGCTGGAC CCTGGCGGTG GCGGTGTTCA GCCGGCAGGT GCCGGCGGAT ATCGTCGCCC GGGTGCTGGC GGTGATGGGG ATGGTCTGCG CCGGTTTTCT GGTGTTCATC CTGTTCACCT CCGGCCCGTT CGCCCGCACG CTGCCGGCCT TTCCGGTAGA GGGGCGCGAC CTGAACCCGC TGCTGCAGGA CCCGGGGCTG ATTTTCCACC CGCCGCTGCT GTACATGGGC TATGTCGGCT TCTCGGTGGC CTTCGCCTTC GCCATCGCCG CGCTGCTGAG CGGGCGTCTG GACAGCGCGT TCACCCGTTT TGCCCGCCCG TGGACGCTGG CGGCGTGGGT GTTCCTGACG CTGGGCATCG TGCTCGGCTC GGCGTGGGCC TACTACGAGC TGGGCTGGGG CGGCTGGTGG TTCTGGGACC CGGTGGAGAA CGCCTCCTTT ATGCCGTGGC TGGCGGGCAC CGCCCTGCTG CACTCGCTGG CGGTCACGGA ACAGCGCGCC GGCTTCAAGG CGTGGACGCT GCTGCTGTCC ATCTGCGCCT TCTCGCTGTG CCTGCTGGGC ACCTTCCTGG TGCGCTCCGG GGTGCTGGTG TCGGTGCACG CCTTCGCCTC CGACCCGGCG CGCGGAATGT TTATCCTCGC CTTTATGGTG CTGGTCACCG GCGGCTCGCT GCTGCTGTTC GCCGTGCGCG GGCACAGGGT GCGTTCGCGG GTGAACAACA CGCTGTGGTC GCGCGAGTCG CTGCTGCTCG GCAACAACGT CCTGCTGATG GCCGCCATGC TGGTGGTGCT GCTGGGCACC CTGCTGCCGC TGGTGCACAA ACAGCTGGGG CTGGGCAGCA TTTCGGTGGG GGAGCCGTTC TTTAACACCA TGTTCACCTG GCTGATGGTC CCCTTTGCCC TGCTGCTGGG GGTGGGGCCT TTAGTGCGCT GGGGCCGGGA CCGGCCACGT AACATCAGGA AACTGCTGCT CACCGCCCTG GTCTCCACCC TGGTGCTGTC GGTACTTTTG CCATGGCTGC TGGAAGATAA AATCATCGCC ATGACGGTGG TGGGGATGGC GATGGCCTGC TGGATTGCGG TGCTGGCGGT TGCCGAAGCC GTACAGCGCG TGTCCCGCGG CACGAAAACC TCTCTCAGCT ACTGGGGAAT GGTGGCGGCG CACCTCGGGC TGGCGGTGAC GATTACCGGC ATCGCCTTCA GCCAGAATTA CAGCGTGGAG CGTGACGTGC GGATGCGGGC GGGCGACAGC GTGACCATTC ACGACTACCG CTTCACCTTC CGGGAGGTGC GGGACATCAC CGGCCCCAAC TACCGCGGCG GGGTGGCCCT CATCGGGGTG ACGCGCCACG GCGAGCCGGA GGCGGTGCTG CACGCGGAGA AACGGCTCTA CAACACCAGC CGGATGGTGA TGACCGAGGC GGCGATTGAC GGCGGGCTGA CCCGCGACCT GTACGCCGCG CTCGGGGAGG AGCTGGACAA CGGCGCGTGG GCCGTGCGCC TGTATTACAA ACCGTTTGTC CGCTGGATAT GGGCCGGGGG ACTGCTGATG GCGCTGGGCG GGCTGCTGTG CCTGGCGGAC CCGCGCTACC GCCGCCGTAA ACCATTGCCG GAGGCCGGAT GA
|
Protein sequence | MMPEYGHALL CLALGVALLL SVYPLWGVAR GDARMMASAG VFAWLLFICV AGAFFVLVHA FVVNDFTVAY VAGNSNTQLP VWYRVAATWG AHEGSLLLWV LLMSGWTLAV AVFSRQVPAD IVARVLAVMG MVCAGFLVFI LFTSGPFART LPAFPVEGRD LNPLLQDPGL IFHPPLLYMG YVGFSVAFAF AIAALLSGRL DSAFTRFARP WTLAAWVFLT LGIVLGSAWA YYELGWGGWW FWDPVENASF MPWLAGTALL HSLAVTEQRA GFKAWTLLLS ICAFSLCLLG TFLVRSGVLV SVHAFASDPA RGMFILAFMV LVTGGSLLLF AVRGHRVRSR VNNTLWSRES LLLGNNVLLM AAMLVVLLGT LLPLVHKQLG LGSISVGEPF FNTMFTWLMV PFALLLGVGP LVRWGRDRPR NIRKLLLTAL VSTLVLSVLL PWLLEDKIIA MTVVGMAMAC WIAVLAVAEA VQRVSRGTKT SLSYWGMVAA HLGLAVTITG IAFSQNYSVE RDVRMRAGDS VTIHDYRFTF REVRDITGPN YRGGVALIGV TRHGEPEAVL HAEKRLYNTS RMVMTEAAID GGLTRDLYAA LGEELDNGAW AVRLYYKPFV RWIWAGGLLM ALGGLLCLAD PRYRRRKPLP EAG
|
| |