| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SeAg_B2072 |
|---|
| Symbol | |
|---|
| ID | 6793018 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salmonella enterica subsp. enterica serovar Agona str. SL483 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011149 |
|---|
| Strand | - |
|---|
| Start bp | 2002809 |
|---|
| End bp | 2003366 |
|---|
| Gene Length | 558 bp |
|---|
| Protein Length | 185 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 642776294 |
|---|
| Product | putative type IV pilin protein |
|---|
| Protein accession | YP_002146922 |
|---|
| Protein GI | 197250465 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.00908282 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGTTTTAT TAAATAATAA AAGAAAAAGC AAGAAAGGTT TCTCATTACT CGAACTATTA
CTTGTGTTAG GTATCATTGC GGCATTAGTC GTTGCGGCTT TTATTGTGTA TCCAAAGGTT
CAGGCTTCAC AAAGAGCGCA AGCGGAAAGT AATAACATAG CAACCATACA GGCAGGTGTT
AAAGCACTCT ATACGCCAGC ATCCAGCTTT ACCGGACTAA CGAACACAGT GGCTGTTCAG
GCAAAAATCT TCCCTGATAA TATGTTAAGT GGAACAGGCA ATGCAGCTAA ACCAATTAAC
GCATTCAAAG GGAACGTGAC GCTGGCTGCG GCAGCTACAG GTCCGTCATC TGCGGCAGGT
TCTTCTTTCA CTATCACGTA TGATAACGTG CCAGCAGCAG AATGTGTGAA AATAACCACA
GCGGCGGCAG GCAACTTTTA CACTGCTAAA GTGGGTTCTA AAGTAGTAAA AGCTGCAGAT
GGCACCCTCG ATGTAGCAGC TACCGCCGCA GCATGTAATA ACGCTACAAG TAATACATTA
GTTTTCACGT CTATTTAA
|
|---|
| Protein sequence | MVLLNNKRKS KKGFSLLELL LVLGIIAALV VAAFIVYPKV QASQRAQAES NNIATIQAGV
KALYTPASSF TGLTNTVAVQ AKIFPDNMLS GTGNAAKPIN AFKGNVTLAA AATGPSSAAG
SSFTITYDNV PAAECVKITT AAAGNFYTAK VGSKVVKAAD GTLDVAATAA ACNNATSNTL
VFTSI
|
|---|
| |