Gene SeAg_B1448 details

Gene Information

• Locus tag: SeAg_B1448
• Symbol: rnb
• ID: 6793065
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Salmonella enterica subsp. enterica serovar Agona str. SL483
• Kingdom: Bacteria
• Replicon accession: NC_011149
• Strand: -
• Start bp: 1406729
• End bp: 1408663
• Gene Length: 1935 bp
• Protein Length: 644 aa
• Translation table: 11
• GC content: 56%
• IMG OID: 642775692
• Product: exoribonuclease II
• Protein accession: YP_002146328
• Protein GI: 197249931
• COG category: [K] Transcription
• COG ID: [COG4776] Exoribonuclease II
• TIGRFAM ID: [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases; [TIGR02062] exoribonuclease II

Plasmid Coverage information

• Num covering plasmid clones: 15
• Plasmid unclonability p-value: 0.0894921
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTTTCAGG ACAACCCGCT GCTAGCGCAG CTTAAACAGC AACTGCATTC CCAGACGCCG 
CGCGCTGAAG GGGTCGTAAA AGCCACGGAA AAAGGCTTTG GCTTCCTTGA AGTTGACGCG 
CAAAAAAGCT ATTTCATTCC TCCACCGCAG ATGAAAAAAG TGATGCATGG CGATCGTATC 
GTCGCGGTCA TCCACACGGA AAAAGAACGG GAGTCTGCCG AGCCGGAAGA ACTGATCGAA 
CCGTTCCTGA CGCGCTTTGT GGGAAAAGTT CAGGGTAAAA ATGACCGCCT GTCCATCGTG 
CCGGATCATC CGTTGCTGAA AGACGCGATT CCCTGCCGCG CCGCGCGCGG CGTTCAGCAT 
GAGTTCAAAG AAGGTGACTG GGCGGTTGCC GAAATGCGCC GCCATCCGCT TAAAGGCGAC 
CGTTCGTTTT ACGCCGATTT AACGCAGTAC ATCACCTTTG CCGACGATCA CTTTGTTCCC 
TGGTGGGTTA CGCTTGCCCG CCATAACCTG GAAAAAGAAG CGCCGAACGG CGTAGCGACG 
GAGATGCTGG ACGAAGGGCT GGAGCGCCAG GATCTTACCG CGCTGAATTT CGTCACTATC 
GATAGCGCCA GCACTGAAGA TATGGATGAC GCGCTTTATG CTGAGGAATT AGCGGACGGC 
AGACTCCAGC TTACGGTGGC TATCGCCGAT CCTACCGCCT GGATTGCCGA AGGCAGTAAG 
CTGGATAACG CCGCGAAAAT TCGCGCCTTC ACCAACTACC TGCCGGGCTT CAATATTCCT 
ATGCTGCCAC GTGAACTGTC TGACGATCTG TGCTCACTGC GCGCCAACGA AGTGCGTCCG 
GCGCTCGCCT GTCGCATGAT AATCGCTGCG GACGGCACCA TTGACGATGA TATCGCCTTT 
TTTGCGGCCA CCATCGAATC GAAGGCCAAG CTGGCGTACG ACAATGTCTC CGACTGGCTG 
GAAAATAACG GCACCTGGCA GCCGGATAAC GAAGGCATTG CCCAGCAGAT TCGTCTGTTG 
CACCGTATTT GTCTAAGCCG CAGTGAGTGG CGTCATCATC ATGCGTTAGT CTTTAAAGAC 
CGCCCGGATT ACCGCTTTGT GCTTGGCGAA AAAGGCGAAG TACTGGATAT TGTGGCGGAA 
CCGCGCCGTA TCGCTAACCG TATCGTAGAA GAGTCGATGA TCGCCGCTAA CCTTTGCGCC 
GCGCGCGTAC TGCGCGATAA GCTCGGTTTC GGTATTTACA ACGTACATAC GGGCTTCGAT 
CCCGCGAATG CCGACGCGCT GGCCGCGCTG CTGAAAACGC ATGGTCTGCA TGTCGATGCC 
GAAGAGGTGC TGACGCTGGA AGGCTTCTGT AAACTGCGTC GCGAACTGGA TGCGCAGCCC 
TCCGGTTTCC TTGACAGCCG CATTCGTCGC TTCCAGTCTT TTGCGGAAAT CAGCACCGAG 
CCGGGGCCGC ATTTCGGTCT TGGTCTTGAG GCTTACGCCA CCTGGACTTC TCCCATCCGT 
AAGTATGGCG ATATGATTAA CCATCGCCTG CTGAAAGCGG TCATCAAGGG GGAAGCTATT 
GCGCGTCCGC AGGAAGATAT CACCCAGCAA ATGGCGGAAC GCCGTCGCCT GAACCGCATG 
GCGGAGCGCG ATGTCGGCGA CTGGTTATAT GCACGCTTCC TTAACGATAA GGCGGGGACA 
AATACCCGTT TCGCGGCAGA AATTATTGAC GTCAGCCGTG GTGGTATGCG TGTGCGACTG 
GTCGATAACG GCGCTATCGC CTTTATCCCT GCCCCGTTCC TGCACGCCGT TCGCGATGAA 
CTGGTATGCA GCCAGGAAAA CGGTACGGTA CAGATTAAAG GTGAGACGGT TTATAAAGTG 
ACGGATGTCA TTGATGTCAC TATTGCGGAA GTTCGCATGG AAACCCGCAG CATTATTGCC 
CGACCGGCAG CGTAA 

 

Protein sequence

MFQDNPLLAQ LKQQLHSQTP RAEGVVKATE KGFGFLEVDA QKSYFIPPPQ MKKVMHGDRI 
VAVIHTEKER ESAEPEELIE PFLTRFVGKV QGKNDRLSIV PDHPLLKDAI PCRAARGVQH 
EFKEGDWAVA EMRRHPLKGD RSFYADLTQY ITFADDHFVP WWVTLARHNL EKEAPNGVAT 
EMLDEGLERQ DLTALNFVTI DSASTEDMDD ALYAEELADG RLQLTVAIAD PTAWIAEGSK 
LDNAAKIRAF TNYLPGFNIP MLPRELSDDL CSLRANEVRP ALACRMIIAA DGTIDDDIAF 
FAATIESKAK LAYDNVSDWL ENNGTWQPDN EGIAQQIRLL HRICLSRSEW RHHHALVFKD 
RPDYRFVLGE KGEVLDIVAE PRRIANRIVE ESMIAANLCA ARVLRDKLGF GIYNVHTGFD 
PANADALAAL LKTHGLHVDA EEVLTLEGFC KLRRELDAQP SGFLDSRIRR FQSFAEISTE 
PGPHFGLGLE AYATWTSPIR KYGDMINHRL LKAVIKGEAI ARPQEDITQQ MAERRRLNRM 
AERDVGDWLY ARFLNDKAGT NTRFAAEIID VSRGGMRVRL VDNGAIAFIP APFLHAVRDE 
LVCSQENGTV QIKGETVYKV TDVIDVTIAE VRMETRSIIA RPAA