Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SeAg_B1099 |
Symbol | icmF |
ID | 6793240 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Agona str. SL483 |
Kingdom | Bacteria |
Replicon accession | NC_011149 |
Strand | - |
Start bp | 1095358 |
End bp | 1098819 |
Gene Length | 3462 bp |
Protein Length | 1153 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 642775366 |
Product | type VI secretion protein IcmF |
Protein accession | YP_002146007 |
Protein GI | 197248094 |
COG category | [S] Function unknown |
COG ID | [COG3523] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | [TIGR03348] type VI secretion protein IcmF |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGCCCCGGT TTAAGGTTTC TGCCGCCTGG CTGCTGGCGC TGGCGTGGAT TTTGCTGCTG GTATGGATCT GGTGGAAAGG TCCGTCATGG ACGCTCTACG AGCAGCGCTG GCTGGCCCCG CTGGCGAACC GCTGGCTGGC CACCGCCGCC TGGGGGTTGA TTGCGCTGGC GTGGCTGACC GTCCGGGTCA TGAAGCGCCT GCAACTGCTG GAAAAACAGC AGCGCCAGCA ACGGGACGAG GCGCAGGATC CGCTCAGCGT GGAACTGAAC ACCCAGCAAC GCTATCTCGA TCACTGGTTA CTGCGTCTGC AACGCCATCT CGACAGCCGC CGCTATCTGT GGCAGCTACC GTGGTATATG GTCATTGGCC CGGCAGGAAG CGGTAAAACC ACGCTGTTGC GCGAAGGGTA TCCGTCCGAC ATCATTTATG CCCCGGAGGC GCTGCGGGGC GTGGAGCAGC GCCGGTATGT TATCCCGCAT GTGGGAAAAC AGGCGGTGAT TTTTGACGCC GACGGTCTCC TCTTTGAGCA ACAGGATGCG GATATACTGC ATCGCCGCCT GTGGACCCAT ATGCTGGACT GGCTGGCGCA AAAACGCGCC CGGCAGCCGC TGAACGGTCT GATACTGACG CTGGATCTGC CCGATCTGCT GACCGCCGAC AAGCCACGCC GTGAGCACCT GTTGCAGATC CTGCGCGGAC GTTTGCAGGA TATACGCCAG CATCTTCACT GCCAGCTCCC CGTCTATGTG GTGCTGACCC GGCTGGATCT ACTGCACGGT TTCGCCGCCC TGTTTCAGTC ACTGGACCGC AACGATCGCG ACGCCATTCT TGGCGTCACC TTTACCCGTC ATGCCCATGA AAATGACGAC TGGCGTACAG AACTGAATGC CTTCTGGCAG GCATGGGGCG AACGGTTGAA TAACGCCCTG CCGGAGCGGA TGTTAGCCCC CGGCTCCCGC AGTTCCCTGT TCAGCTTTGT CCGCCAGATC CAGGGGGGCC GCGAGCCGCT GATCGCCCTG CTGAACGGGC TGCTGGACGG GGAAAATATG GATGTGATGC TGCGCGGCGT GTACCTCACC TCCTCCCTGC AACGCGGCCA GATAGACGAT ATTTTTATGC AGTCCGCCGC CCGTCAGTTC CGGCTGGGCA GCAGCCCGCT GACCGCCTGG CCGCTGGTGG ACACGTTACC GTATTTCACC CGTAATCTGT TTCCGCAGAC CTTACTGGCT GAGCCTAACC TCGCCAGTGA AAGCCGCGTC TGGCTGATGC AGTCCCGCCG CCGGTTGTCC GTGTTTTCCG CCACCGGCGG CATCGCCGCC CTGCTGCTGA TTATCGGCTG GCATCACTAT TACAATAACA ACTGGCGTTC CGGCATCACC GTACTGGAGC AGGCCAAAGC CTTTATGTCC GTGCCGCCAC CGCAGGGTAT GGACGAATAC GGCAACCTGC AACTGCCGTT ACTTAACCCG GTGCGTGACG CCACGCTGGC CTACGGCGAC TGGGGCGATC GCAGCCGCCT GGCCGATATG GGATTATATC AGGGCAGGCG TGTCGGCCCA TATGTGGAGC AGACCTACCT GCAACTGCTG GAGCAGCGTT ACCTGCCCGC CCTGTTTAAC GGCCTGGTCA AAGAGATGAA TGCCGCGCCT GCGGAGAGCG AGGAGAAGCT TGCGGTATTG CGCGTTATCA GAATGCTGGA AGATAAAAGC GGACGCAGCG ACGAGGTGGT GAAGCAGTAT ATGGCGAAAC GCTGGAGTGA TAAATTTCAC GGCCAGCGCG ATATTCAGGC ACAGCTGATG TCTCATCTGG ACTACGCGCT GAAACACACC GACTGGCACG CGGAGCGTCA GGCAGGCGAC GGCGACGCCA TCAGCCGCTG GACGCCGTAT GACAGTCCGG TCGTGGCGGC GCAGAAAGAG CTCAGCAAAC TGCCCGTCTA CCAGCGCGTT TACCAGAGTC TGAAAACGCG GGCGATGGGC GTGCTGCCCG CTGACCTGAA CCTGCGCGAC CAGGTGGGCG CCACGTTTGA TCAGGTCTTT ACCTCCGGGG ATGATAATAA GCTCATTGTT CCGCAGTTCC TCACCCGTTA CGGTCTGCAA AGTTATTTTG TCAAACAGCG CGACGCGCTG ATCGAACTGA CGGCGATGGA TTCCTGGGTG CTGAACCTGA CCCGCAGCGT GAAATACAGC GACGCCGACC GGGCAGAAAT CCAGCGCCAG CTCACTGAAC AGTATCTCAG CGACTACACC GCCACCTGGC GAGCCGGAAT GGACAACCTT AACGTGCGCA ATTACGAATC CATTGCGCAA CTGACCGGGG CGCTGGAGCA GATCATCAGC GGCGATCAGC CGCTCCAGCG GGCGCTGACG GCACTGCGCG ACAACACGCA GCCTGCCGTT CTCTCTGAAA AACTGGATGA CAAGGCGCTT CAGGAGGCGA TGGCGGAGCC GGATTACCAG TTGCTGACCC GCCTGGGGCA TGAATTTGCC CCGGAAAACA GCACGCTGGC GATACAGAAA GACAAAGAAA ACACCCTCCA GGCGGTCTAT CAGCAACTGA CGGAGCTGCA CCGTTACCTG CTGGCTATTC AGAACGCGCC GGTGCCGGGA AAATCAGCGC TGAAAGCGGT GCAGCTACGG CTGGATCAGA ACAGCAGCGA TCCTATTTTC GCCACCCGCC AGATGGCGAA AACCCTGCCT GCCCCGCTCA ACCGCTGGGT GGGCAAGCTG GCGGATCAGG CCTGGCACGT GGTGATGGTG GAAGCGGTCC ATTACATGGA GATTGACTGG CGTGACAACG TGGTGAAACC GTTTAACGAA CAGCTTGCCA ACAACTATCC GTTTAACCCG CGCTCACAGT CAGATGCGTC GCTGGATGCG TTTGAACGCT TCTTTAAACC GAATGGCGTA CTGGATACCT TTTATCAGCA GAACCTGCGG CTGTTTATGG AAAACGATCT GAGTCTGGAG GACGGGGATA ACAACGTGAT TATTCGTGAG GATGTCCGGG AGCAACTGGA TACCGCACAG GAAATCCGCG AGGCGTTTTT CAGCAGACAG AACGGCCTGG GCGCGCAGTT TGCCGTGGAA ACCGTGTCGC TTTCCGGCAA CAAACGGCGC AGCGTGCTGA ACCTGGACGG GCAGTTAGTG GACTACAGCC AGGGCCGCAA TTACACCGCC CATCTGGTCT GGCCGAACAA CATGCGTGAA GGCAATGAAA GTAAGCTGAC GCTGATAGGC GTCAGTGGCG GCGCGCCGCG CAGCATCAGT TTCAGCGGAC CGTGGGCGCA GTTCAGGCTG TTCGGCGCCG GGCAACTTAC CGGCGTTCAG GAGGGGACAT TCAGCGTGCG CTTTAACGTG GACGGCGGAG CGATGGTGTA CCGGGTACAT ACCGATACGG AAGATAACCC CTTCACCGGC GGGCTGTTCA GTCAGTTCCG GCTGCCGGAT ACCCTGTACT GA
|
Protein sequence | MPRFKVSAAW LLALAWILLL VWIWWKGPSW TLYEQRWLAP LANRWLATAA WGLIALAWLT VRVMKRLQLL EKQQRQQRDE AQDPLSVELN TQQRYLDHWL LRLQRHLDSR RYLWQLPWYM VIGPAGSGKT TLLREGYPSD IIYAPEALRG VEQRRYVIPH VGKQAVIFDA DGLLFEQQDA DILHRRLWTH MLDWLAQKRA RQPLNGLILT LDLPDLLTAD KPRREHLLQI LRGRLQDIRQ HLHCQLPVYV VLTRLDLLHG FAALFQSLDR NDRDAILGVT FTRHAHENDD WRTELNAFWQ AWGERLNNAL PERMLAPGSR SSLFSFVRQI QGGREPLIAL LNGLLDGENM DVMLRGVYLT SSLQRGQIDD IFMQSAARQF RLGSSPLTAW PLVDTLPYFT RNLFPQTLLA EPNLASESRV WLMQSRRRLS VFSATGGIAA LLLIIGWHHY YNNNWRSGIT VLEQAKAFMS VPPPQGMDEY GNLQLPLLNP VRDATLAYGD WGDRSRLADM GLYQGRRVGP YVEQTYLQLL EQRYLPALFN GLVKEMNAAP AESEEKLAVL RVIRMLEDKS GRSDEVVKQY MAKRWSDKFH GQRDIQAQLM SHLDYALKHT DWHAERQAGD GDAISRWTPY DSPVVAAQKE LSKLPVYQRV YQSLKTRAMG VLPADLNLRD QVGATFDQVF TSGDDNKLIV PQFLTRYGLQ SYFVKQRDAL IELTAMDSWV LNLTRSVKYS DADRAEIQRQ LTEQYLSDYT ATWRAGMDNL NVRNYESIAQ LTGALEQIIS GDQPLQRALT ALRDNTQPAV LSEKLDDKAL QEAMAEPDYQ LLTRLGHEFA PENSTLAIQK DKENTLQAVY QQLTELHRYL LAIQNAPVPG KSALKAVQLR LDQNSSDPIF ATRQMAKTLP APLNRWVGKL ADQAWHVVMV EAVHYMEIDW RDNVVKPFNE QLANNYPFNP RSQSDASLDA FERFFKPNGV LDTFYQQNLR LFMENDLSLE DGDNNVIIRE DVREQLDTAQ EIREAFFSRQ NGLGAQFAVE TVSLSGNKRR SVLNLDGQLV DYSQGRNYTA HLVWPNNMRE GNESKLTLIG VSGGAPRSIS FSGPWAQFRL FGAGQLTGVQ EGTFSVRFNV DGGAMVYRVH TDTEDNPFTG GLFSQFRLPD TLY
|
| |