| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SeAg_B1062 |
|---|
| Symbol | hpaD |
|---|
| ID | 6795107 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salmonella enterica subsp. enterica serovar Agona str. SL483 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011149 |
|---|
| Strand | + |
|---|
| Start bp | 1060965 |
|---|
| End bp | 1061816 |
|---|
| Gene Length | 852 bp |
|---|
| Protein Length | 283 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 642775331 |
|---|
| Product | 3,4-dihydroxyphenylacetate 2,3-dioxygenase |
|---|
| Protein accession | YP_002145972 |
|---|
| Protein GI | 197251582 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3384] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | [TIGR02298] 3,4-dihydroxyphenylacetate 2,3-dioxygenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 36 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGGCAAGT TAGCGTTAGC AGCAAAAATT ACCCACGTGC CGTCGATGTA TCTTTCTGAA
CTACCAGGAA AAAATCACGG TTGTCGTCAG GCAGCCATTG ATGGGCATAT TGAAATTGGC
AAGCGTTGCC GCGAAATGGG CGTTGACACC ATTATCGTAT TCGACACCCA CTGGCTGGTG
AATAGCGCTT ACCACATTAA TTGTGCCGAC CATTTCCAGG GCGTCTATAC CAGCAACGAA
TTGCCGCACT TTATTCGCGA CATGACCTAT GACTATGACG GTAATCCGGA GCTCGGCCAC
CTGATCGCCG ACGAGGCAGT CAAACTGGGC GTGCGCGCTA AAGCGCATAA CATCCCGAGC
CTGAAGCTGG AGTATGGCAC GCTGGTACCG ATGCGCTACA TGAACAGCGA CAAGCACTTC
AAAGTGGTCT CCATTTCGGC GTTCTGCACT GTGCATGATT TTGCCGACAG TCGCAGACTG
GGCGAAGCCA TTCTCAAGGC GATTGAGAAA TATGACGGTA CCGTAGCGGT ATTCGCCAGT
GGTTCTCTGT CGCACCGTTT TATTGACGAC CAACGGGCGG AAGAGGGGAT GAACAGCTAC
ACCCGCGAGT TCGATCATCA AATGGACGAG CGCGTGGTCA AGCTGTGGCG CGAAGGCAAA
TTCAAGGAGT TTTGCACCAT GTTGCCGGAG TACGCCGACT ACTGCTACGG CGAAGGCAAC
ATGCACGACA CGGTCATGCT GCTGGGAATG CTGGGTTGGG ACAAATACGA CGGCAAGGTG
GAGTTCATCA CCGACCTGTT CGCCAGCTCC GGTACCGGCC AGGTAAACGC TGTTTTCCCG
CTGCCTGCGT AA
|
|---|
| Protein sequence | MGKLALAAKI THVPSMYLSE LPGKNHGCRQ AAIDGHIEIG KRCREMGVDT IIVFDTHWLV
NSAYHINCAD HFQGVYTSNE LPHFIRDMTY DYDGNPELGH LIADEAVKLG VRAKAHNIPS
LKLEYGTLVP MRYMNSDKHF KVVSISAFCT VHDFADSRRL GEAILKAIEK YDGTVAVFAS
GSLSHRFIDD QRAEEGMNSY TREFDHQMDE RVVKLWREGK FKEFCTMLPE YADYCYGEGN
MHDTVMLLGM LGWDKYDGKV EFITDLFASS GTGQVNAVFP LPA
|
|---|
| |