| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SeAg_B0592 |
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| Symbol | |
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| ID | 6794391 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Salmonella enterica subsp. enterica serovar Agona str. SL483 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011149 |
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| Strand | + |
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| Start bp | 588895 |
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| End bp | 591507 |
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| Gene Length | 2613 bp |
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| Protein Length | 870 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 642774873 |
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| Product | outer membrane usher protein SfmD |
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| Protein accession | YP_002145529 |
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| Protein GI | 197249799 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3188] P pilus assembly protein, porin PapC |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.0701442 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAGAAGA CAACCTGGTT TGCAGGGCGA TTTCCCGGCT ATGTATCACC GTTAAACGGC
GTGGCGCTGT CGGTGCTGGC GGCGCTGTGT CCGCTGACGA GCCGCGGCGA AAGTTATTTC
AACCCTGCGT TTTTGTCGGC GGATACCGCG TCCGTGGCGG ATTTATCTCG CTTTGAAAAA
GGTAATCATC AGCCGCCCGG TATTTACCGG GTGGATATCT GGCGTAACGA CGAATTCGTA
GCGACGCAGG ATATTCGTTT TGAGGCGGGC GCCGTGGGTG CCGGCGATAA ATCCGGCGGC
CTGATGCCTT GTTTTACACC GGAGTGGATT AAACGGCTGG GCGTGAATAC CGCGGCGTTC
CCTGTCTCAG ATAAAGGCGT CGATACCACG TGTATTCACC TTCCTGAGAA AATCCCGGGC
GCGGAGGTCG CGTTTGATTT CGCGTCGATG CGCTTAAATA TTAGCTTGCC GCAGGCGTCA
TTGCTCAACA GCGCGCGTGG CTATATCCCG CCGGAAGAGT GGGATGAAGG GATACCCGCC
GCACTCATTA ATTACAGTTT TACCGGTAGC CGCGGAACAG ACAGCGATAG CTATTTTTTG
AGTCTGCTGA GCGGGTTGAA CTATGGCCCC TGGCGGCTGC GTAATAACGG AGCCTGGAAT
TATTCGAAAG GGGACGGCTA TCATTCGCAA CGCTGGAACA ACATTGGCAC TTGGGTACAG
CGCGCCATCA TTCCGCTAAA AAGCGAACTG GTCATGGGGG ACAGCAATAC CGGGAACGAT
GTTTTCGACA GCGTCGGCTT TCGCGGAGCG CGGCTGTACT CTTCTGACAA TATGTATCCC
GATAGCCTGC AGGGCTACGC CCCCACGGTC AGAGGGATCG CCCGGACGGC GGCAAAGCTG
ACGATACGAC AGAACGGGTA TGTTATCTAC CAAAGCTATG TGTCGCCGGG CGCGTTTGCG
ATTACCGATC TTAATCCTAC CTCTTCCAGC GGCGACCTTG AGGTGACGGT AGATGAAAAA
GACGGTAGCC AACAACGTTA CACGGTGCCT TACTCTACCG TTCCGCTATT GCAGCGTGAG
GGCAGGGTGA AGTATGACCT GGTGGCCGGG GATTTTCGCA GCGGCAATAG TCAGCAGTCT
TCGCCATTCT TTTTCCAGGG AACGGTGATT GCCGGCCTGC CTGCGGGGCT GACGGCTTAC
GGCGGTACGC AACTTGCCGA TCGTTACCGT GCTGTGGTGG TCGGGGCGGG GCGAAATTTG
GGCGACTGGG GAGCCGTGTC GGTCGATGTC ACACATGCGC GTAGCCAACT GGCAGATGAC
AGCACCCATC AGGGGCAATC GTTGCGTTTT CTGTACGCCA AATCGCTGAA TAATTACGGG
ACTAATTTTC AATTGCTGGG CTACCGCTAT TCCACGCGCG GATTTTACAC CCTGGATGAT
GTGGCATACC GCAGTATGGA AGGGTACGAC TACGAATACG ATAGCGACGG ACGCCGCCAT
AAAGTGCCGG TGGCGCAGAG CTACCACAAT CTCCGTTACA GCAAAAAAGG CCGCTTTCAG
GTCAATATTT CGCAAAACCT GGGGGATTAC GGGTCACTGT ATCTTTCCGG CAGTCAACAA
AATTACTGGA ATACGGCGGA TACCAATACC TGGTATCAAC TGGGATACGC CAGTGGATGG
CAAGGCATAA GTTATTCGCT GTCATGGTCG TGGAGCGAGT CGGTGGGGAT CTCAGGCGCC
GATCGCATTC TGGCATTCAA TATGTCCGTT CCGTTTAGCG TTCTGACCGG ACGGCGCTAT
GCGCGCGACA CTATTCTTGA TCGTACTTAT GCCACGTTTA ACGCCAACCG CAACCGCGAC
GGCGACAATA GCTGGCAGAC CGGCGTGGGC GGCACGCTTC TGGAAGGACG TAATCTGAGC
TACAGCGTGA CGCAGGGTCG TAGCAGTACC AATGGTTATA GCGGCAGCGC CAGCGCTAGC
TGGCAGGCGA CGTATGGCAC GCTGGGCGTG GGATATAACT ACGATCGCGA TCATCATGAC
TATAACTGGC AACTTTCCGG CGGCGTGGTC GGTCATGCGG ATGGTATTAC GTTTAGCCAA
CCGTTGGGCG ATACCAATGT CTTGATTAAA GCGCCGGGAG CGAAAGGCGT GCGCATCGAA
AACCAGACCG GCGTGAAAAC GGACTGGCGG GGTTATGCGG TAATGCCCTA CGCCACGGTA
TATCGCTATA ACCGCGTCGC GTTAGATACC AACACGATGG ACAACCATAC CGATGTCGAA
AATAACGTCA GCAGCGTAGT GCCGACAGAG GGCGCGCTGG TGCGGGCTGC TTTTGATACG
CGGATAGGCG TAAGGGCAAT CATTACCGCG AGGCTTGGCG GACGTCCGTT ACCGTTTGGC
GCGATAGTAC GAGAAACCGC CAGCGGCATT ACCAGTATGG TCGGCGATGA CGGGCAAATT
TATCTGAGCG GCTTGCCGCT AAAAGGTGAA CTGTTCATCC AGTGGGGAGA GGGGAAAAAC
GCGCGTTGTA TCGCCCCTTA CGCCCTGGCG GAGGACAGCT TAAAGCAGGC GATCACGATA
GCCAGCGCGA CCTGTATCCG TCCGTCGTCA TAA
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| Protein sequence | MKKTTWFAGR FPGYVSPLNG VALSVLAALC PLTSRGESYF NPAFLSADTA SVADLSRFEK
GNHQPPGIYR VDIWRNDEFV ATQDIRFEAG AVGAGDKSGG LMPCFTPEWI KRLGVNTAAF
PVSDKGVDTT CIHLPEKIPG AEVAFDFASM RLNISLPQAS LLNSARGYIP PEEWDEGIPA
ALINYSFTGS RGTDSDSYFL SLLSGLNYGP WRLRNNGAWN YSKGDGYHSQ RWNNIGTWVQ
RAIIPLKSEL VMGDSNTGND VFDSVGFRGA RLYSSDNMYP DSLQGYAPTV RGIARTAAKL
TIRQNGYVIY QSYVSPGAFA ITDLNPTSSS GDLEVTVDEK DGSQQRYTVP YSTVPLLQRE
GRVKYDLVAG DFRSGNSQQS SPFFFQGTVI AGLPAGLTAY GGTQLADRYR AVVVGAGRNL
GDWGAVSVDV THARSQLADD STHQGQSLRF LYAKSLNNYG TNFQLLGYRY STRGFYTLDD
VAYRSMEGYD YEYDSDGRRH KVPVAQSYHN LRYSKKGRFQ VNISQNLGDY GSLYLSGSQQ
NYWNTADTNT WYQLGYASGW QGISYSLSWS WSESVGISGA DRILAFNMSV PFSVLTGRRY
ARDTILDRTY ATFNANRNRD GDNSWQTGVG GTLLEGRNLS YSVTQGRSST NGYSGSASAS
WQATYGTLGV GYNYDRDHHD YNWQLSGGVV GHADGITFSQ PLGDTNVLIK APGAKGVRIE
NQTGVKTDWR GYAVMPYATV YRYNRVALDT NTMDNHTDVE NNVSSVVPTE GALVRAAFDT
RIGVRAIITA RLGGRPLPFG AIVRETASGI TSMVGDDGQI YLSGLPLKGE LFIQWGEGKN
ARCIAPYALA EDSLKQAITI ASATCIRPSS
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