| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SeAg_B0331 |
|---|
| Symbol | |
|---|
| ID | 6796627 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salmonella enterica subsp. enterica serovar Agona str. SL483 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011149 |
|---|
| Strand | + |
|---|
| Start bp | 324863 |
|---|
| End bp | 327373 |
|---|
| Gene Length | 2511 bp |
|---|
| Protein Length | 836 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 642774624 |
|---|
| Product | outer-membrane fimbrial usher protein |
|---|
| Protein accession | YP_002145281 |
|---|
| Protein GI | 197248731 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3188] P pilus assembly protein, porin PapC |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAGTTCA AACAACCTGC CTTGCTACTG TTCATCGCGG GAGTGGTTCA TTGCGCAAAT
GCGCACGCTT ACACATTCGA TGCATCAATG TTGGGCGATG CAGCGAAAGG GGTTGATATG
TCGCTCTTTA ACCAGGGGGT ACAACAGCCA GGGACTTATC GCGTGGACGT GATGGTGAAT
GGTAAACGTG TCGACACCCG TGATGTGGTG TTCAAATTGG AAAAGGATGG GCAAGGAACG
CCTTTTCTGG CTCCTTGTTT GACGGTCAGT CAGCTTTCAC GCTACGGCGT AAAAACGGAA
GATTACCCTC AGTTGTGGAA AGCAGCAAAG ACCCCAGATG AGTGTGCGGA TCTGAGCGCC
ATTCCACAGG CTAAAGCGGT ACTGGATATC AATAATCAGC AACTGCAACT GAGTATTCCT
CAGGTGGCGT TGCGTACGAA ATTTAAGGGG ATCGCTCCTG AAGATCTCTG GGATGATGGT
ATTCCGGCGT TTCTGATGAA CTACAGTGCG AGGACAACGC AGACGGATTA CAAAATGGAT
ATGGAGAGGC GTGACAACTC TTCCTGGGTA CAACTGCAAC CGGGAATCAA TATAGGTGCG
TGGCGTGTCC GCAATGCGAC CAGCTGGCAG CGGAGTGGTC AACAGTCGGG GAAGTGGCAG
GCAGCATATA CCTATGCTGA GCGTGGACTG TACTCACTAA AAAGTCGTCT GACTCTGGGG
CAAAAGACTT CGCAGGGGGA GATATTTGAT AGTGTGCCAT TTACCGGTGT GATGTTGGCA
TCGGATGACA ACATGGTGCC CTACAGTGAG CGGCAGTTTG CTCCGGTAGT GCGTGGGATT
GCCCGCACGC AGGCTCGGGT GGAGGTCAAA CAGAATGGTT ACACCATTTA CAACACCACC
GTGGCGCCCG GACCGTTTGC ACTGCGGGAT CTGTCGGTAG CAGACAGTAG TGGTGATCTG
CATGTCACCG TGTGGGAGGC CGATGGCAGT ACACAAATGT TTGTGGTGCC GTATCAGACC
CCGGCGATAG CACTGCACCA GGGATATTTG AAGTACAGCC TGTTGGCGGG CCGATACCGA
TCGTCAGACT CTGCAACGGA TAAGGCGCAG ATCGCGCAGG CTACGTTGAT GTATGGTCTG
CCGTGGAACC TCACTGCATA CGGCGGTATA CAGAGTGCAA CGCACTATCA AGCTGCATCG
CTTGGTTTGG GGGGATCTCT CGGGCGGTGG GGGAGTTTAT CTGTCGATGG AAGCGACACA
CACAGTCAGC GTCAGGGGGA GGCGGTACAG CAAGGAGCCT CCTGGCGACT GCGTTACAGC
AACCAGCTGA CTGCGACGGG GACAAATTTT TTTCTGACGA GATGGCAGTA TGCCTCGCAG
GGCTATAACA CCCTATCCGA TGTGCTCGAC AGTTATCGAC ATAATGGCAA CCGTCTATGG
TCGTGGCGGG AAAATTTGCA GCCGAGCTCG CGTACTACCC TGATGTTGAG TCAGTCATGG
GGGAGGCATT TGGGCAATCT GAGTTTAACC GGTTCCCGTA CCGACTGGCG TAATCGCCCC
GGTCATGATG ACAGCTACGG ACTGAGTTGG GGAACCTCTA TCGGAGGGGG CTCGCTGTCA
TTGAACTGGA ATCAAAACAG GACGCTGTGG CGCAATGGCG CGCACCGTAA AGAGAACATA
ACCAGCCTGT GGTTCAGTAT GCCATTAAGC CGCTGGACGG GGAATAATGT AAGTGCTAGT
TGGCAGATGA CTTCACCATC ACACGGTGGT CAGACGCAAC AAGTGGGGGT CAACGGAGAG
GCATTCAGTC AGCAACTGGA TTGGGAGGTG CGTCAGAGTT ACCGTGCCGA TGCCCCGCCA
GGTGGTGGTA ATAACAGCGC ATTGCACTTG GCATGGAATG GGGCTTACGG CCTGTTAGGT
GGTGACTATA GCTACAGCCG GGCGATGCGC CAGATGGGAG TCAATATCGC GGGAGGTATA
GTTATCCACC ATCATGGTGT GACGCTGGGG CAACCTTTGC AAGGCTCAGT GGCGCTGGTT
GAAGCGCCAG GGGCCTCGGG GGTGCCAGTT GGCGGCTGGC CTGGCGTTAA GACGGATTTT
CGTGGCGACA CCACAGTGGG CAACCTGAAC GTCTATCAGG AGAATACAGT CAGCCTCGAT
CCGTCGCGAC TACCGGATGA CGCAGAGGTC ACACAAACCG ATGTGCGCGT GGTGCCAACC
GAAGGGGCGG TGGTGGAAGC GAAGTTTCAC ACTCACATCG GGGCCAGGGC ACTGATGACG
CTGAAACGGG AAGATGGTAG CGCCATTCCT TTCGGGGCGC AGGTTACAGT CAATGGGCAG
GATGGCAGTG CTGCTCTGGT GGATACTGAT AGCCAGGTTT ATCTCACTGG TTTGGCGGAT
AAGGGCGAAC TGACGGTGAA ATGGGGAGCA CAGCAATGTC GGGTTAACTA CCAGCTACCT
GCCCACAAGG GAATCGCGGG CTTGTATCAA ATGAGCGGTC TCTGCAGATA G
|
|---|
| Protein sequence | MKFKQPALLL FIAGVVHCAN AHAYTFDASM LGDAAKGVDM SLFNQGVQQP GTYRVDVMVN
GKRVDTRDVV FKLEKDGQGT PFLAPCLTVS QLSRYGVKTE DYPQLWKAAK TPDECADLSA
IPQAKAVLDI NNQQLQLSIP QVALRTKFKG IAPEDLWDDG IPAFLMNYSA RTTQTDYKMD
MERRDNSSWV QLQPGINIGA WRVRNATSWQ RSGQQSGKWQ AAYTYAERGL YSLKSRLTLG
QKTSQGEIFD SVPFTGVMLA SDDNMVPYSE RQFAPVVRGI ARTQARVEVK QNGYTIYNTT
VAPGPFALRD LSVADSSGDL HVTVWEADGS TQMFVVPYQT PAIALHQGYL KYSLLAGRYR
SSDSATDKAQ IAQATLMYGL PWNLTAYGGI QSATHYQAAS LGLGGSLGRW GSLSVDGSDT
HSQRQGEAVQ QGASWRLRYS NQLTATGTNF FLTRWQYASQ GYNTLSDVLD SYRHNGNRLW
SWRENLQPSS RTTLMLSQSW GRHLGNLSLT GSRTDWRNRP GHDDSYGLSW GTSIGGGSLS
LNWNQNRTLW RNGAHRKENI TSLWFSMPLS RWTGNNVSAS WQMTSPSHGG QTQQVGVNGE
AFSQQLDWEV RQSYRADAPP GGGNNSALHL AWNGAYGLLG GDYSYSRAMR QMGVNIAGGI
VIHHHGVTLG QPLQGSVALV EAPGASGVPV GGWPGVKTDF RGDTTVGNLN VYQENTVSLD
PSRLPDDAEV TQTDVRVVPT EGAVVEAKFH THIGARALMT LKREDGSAIP FGAQVTVNGQ
DGSAALVDTD SQVYLTGLAD KGELTVKWGA QQCRVNYQLP AHKGIAGLYQ MSGLCR
|
|---|
| |