Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SeAg_B0078 |
Symbol | caiC |
ID | 6793453 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Agona str. SL483 |
Kingdom | Bacteria |
Replicon accession | NC_011149 |
Strand | - |
Start bp | 82377 |
End bp | 83930 |
Gene Length | 1554 bp |
Protein Length | 517 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 642774389 |
Product | putative crotonobetaine/carnitine-CoA ligase |
Protein accession | YP_002145053 |
Protein GI | 197247510 |
COG category | [I] Lipid transport and metabolism [Q] Secondary metabolites biosynthesis, transport and catabolism |
COG ID | [COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 46 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGGATATCG TTGGCGGACA AAACTTACGT CAGATGTGGG ACGACCTGGC CGGGGTGTAC GGAGATAAAA CGGCGTTAAT TTTCGAATCC TGTGAGGGAA TCGTTCGGCA GTTTAGCTAT GCTTCGCTCA ATGAAGAGAT TAACCGCACG GCGAACCTTT TTTATTCCTT AGGGATCCGC AAGGGTGATA GGGTCGCGCT GCATCTGGAT AACTGTCCGG AATTCATCTT TTGCTGGTTT GGACTGGCAA AAATCGGCGC CATTATGGTG CCGATTAATG CTCGCTTACT GGGCGAAGAA AGCGCCTGGA TCCTGCAAAA CAGCCAGGTG AGTCTGCTGG TTACCAGCGC CCAGTTTTAT CCTATGTACC GTGAAATACG CCAGGACAAT AGCACTCCGC TTAATCATAT CTGTCTGATT GGCGAGCAGC TTCCGGCTGA CGACGGCGTG AGTCACTTTA CCCAACTGCA ATCCCGCCAG TCCACCACGC TGTGCTATAC GCCCGCGTTA TCCACTGACG ATACGGCGGA AATTCTGTTT ACCTCAGGCA CCACCTCACG GCCTAAAGGG GTGGTAATTA CCCACTACAA CCTGCGTTTT GCAGGCTACT ACTCTGCCTG GCAAATCGCC CTGCGCGATG ATGACGTGTA CATGACGGTG ATGCCCGCGT TTCATATCGA TTGTCAGTGT ACCGCCGCAA TGCCTGCATT CTCCGCTGGC AGCACCTTTG TCCTGCTAGA GAAGTACAGT GCCAGGGCCT TCTGGGATCA GGTACGTAAA TATCAGGCGA CGGTGACCGA GTGCATCCCG ATGATGATCC GCACGCTGAT GGTCCAGCCC GCCGCACCAA CGGACAGGCA GCATCACCTG CGCGAAGTGA TGTTCTATCT CAATTTATCC GAGCAGGAAA AAGACGATTT TACCGAACGC TTTGGCGTCA GGCTGCTGAC CTCTTATGGT ATGACTGAAA CCATTGTCGG AATTATTGGC GACCGTCCCG GAGACAAACG GCGCTGGCCT TCCATTGGTC GCGTGGGTTT TAGCTATGAA GCTGAAATTC GCGACGATCA AAATCGCCCG CTGCCCGCCG GAGAAATTGG CGAAATCTGT ATTAAAGGCA TCCCCGGCAA GACTATCTTC AAAGAGTATT ACATGCAGCC GGAGGCAACC GCCAGGGCGC TGGAACCAGA GGGCTGGTTA CATACCGGTG ATTCGGGTTA CCAGGATGAG GATGGCTATT TCTATTTTGT CGACAGACGC TGCAACATGA TTAAACGCGG CGGGGAAAAT GTCTCCTGCG TCGAGCTGGA AAATATTATT TCTGCGCATC CGAAAATTCA GGACATTGTG GTGGTTGGTA TTAAAGACGC GATCCGTGAT GAAGCCATTA AAGCGTTTAT TGTCCTTAAT GAAGGTGAAA CATTAAGCGA AGCCGAGTTT TTCAGCTTCT GCGAAAACAA TATGGCGAAG TTCAAGGTTC CCTCTTTTAT GGAGATCAGA ACCGACCTGC CGCGCAACTG TTCAGGAAAA ATAATCAAAA AAAATCTGAA ATAA
|
Protein sequence | MDIVGGQNLR QMWDDLAGVY GDKTALIFES CEGIVRQFSY ASLNEEINRT ANLFYSLGIR KGDRVALHLD NCPEFIFCWF GLAKIGAIMV PINARLLGEE SAWILQNSQV SLLVTSAQFY PMYREIRQDN STPLNHICLI GEQLPADDGV SHFTQLQSRQ STTLCYTPAL STDDTAEILF TSGTTSRPKG VVITHYNLRF AGYYSAWQIA LRDDDVYMTV MPAFHIDCQC TAAMPAFSAG STFVLLEKYS ARAFWDQVRK YQATVTECIP MMIRTLMVQP AAPTDRQHHL REVMFYLNLS EQEKDDFTER FGVRLLTSYG MTETIVGIIG DRPGDKRRWP SIGRVGFSYE AEIRDDQNRP LPAGEIGEIC IKGIPGKTIF KEYYMQPEAT ARALEPEGWL HTGDSGYQDE DGYFYFVDRR CNMIKRGGEN VSCVELENII SAHPKIQDIV VVGIKDAIRD EAIKAFIVLN EGETLSEAEF FSFCENNMAK FKVPSFMEIR TDLPRNCSGK IIKKNLK
|
| |