| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gbem_4058 |
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| Symbol | trmE |
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| ID | 6780921 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Geobacter bemidjiensis Bem |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011146 |
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| Strand | - |
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| Start bp | 4611310 |
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| End bp | 4612677 |
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| Gene Length | 1368 bp |
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| Protein Length | 455 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 642770051 |
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| Product | tRNA modification GTPase TrmE |
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| Protein accession | YP_002140844 |
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| Protein GI | 197120417 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0486] Predicted GTPase |
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| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR00450] tRNA modification GTPase TrmE |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.239105 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTATGTCC GCGACACAAT TGCAGCGATC AGCACTCCGG TAGGGGAAGG CGGCATCGGG
ATCGTCAGGA TAAGCGGCCC CGCAGCTCTG CAGATCGCCC GGAGCATCTT CAACGCCAAA
TCGAACGGTG GCCTAAAAAG CCACCGTTTT TCTTATGGTG AAGTGGTACA GCCCGGAACC
GGCGACCTGG TGGACGAGGC CATGGCTGTA TATATGAAGG CGCCCAACTC CTACACCCGC
GAGGACGTGG TCGAGATACA GTGCCACGGC GGCACCCTCG TTGTCTCCCG CATCCTTGCG
CTGGTGATCT CCCAAGGGTC GCGCCCGGCT GAGCCAGGCG AGTTCACCAA GCGCGCCTTC
CTCAACGGGC GCATCGACCT GGTGCAGGCA GAAGCCGTGA TGGACGTCAT ATCCAGCCGT
ACCGATGCGT CATTGGCACT GGCCCAGCAT CAGCGGGAAG GGCTCTTGTC GCAGCGCATC
TCAACGGTGA AAGAGGGGAT AGTTTACGCG CTGGCCTATG TCGAGGCGTT GATCGACTTC
CCCGAGGATG ACGTGAATGT CGCAGTAGAG ACCGACGTCT TGGGTAAAGT GGCCCCCGCT
TTGGCTGAAC TCGACGCCCT GATAGCCGGC TTCGACGAGG GGAGGGTGCT TCGCGACGGC
GTATCCGTCG TCATCGCCGG CAAGCCGAAC GTAGGAAAGT CGAGCCTGCT CAACACGCTC
TTGAAGGAAA AACGCGCCAT AGTCACCTCC GTTCCCGGCA CCACCAGGGA CCTCATCGAG
GAGGTCGTAA ACATAAACGG CCTACCGGTG AAGCTCCTGG ACACTGCCGG GATCCGCGAG
TCGGAAGACC AAGTAGAGCA GGAAGGCGTG CGCCTTTCTC TGGACCGTAT TCCCAAGGCG
GACCTTGTTC TTTTTGTCAT CGACGGGTCG TCCGCTTTCG GGGATGAAGA CGCCGCCATC
CTGGAGGCAA TCGGATCGAA GAGCTGCATC GTGGTGCGCA ACAAGTCCGA CCTGCCGCTG
GCGGTAGACC TTCCATCTGG CTGCTCCGCT CCGGTGGTCG CTATCTCCAC CCACACTGGA
GACGGTGTCC CTCAACTGCG TGACGCCATC ACTAACGCCT TCATGCACGG GCACGCCATA
GACGGCCGGG AGTTTGTAGC CCTCTCCAAG GCGCGGCATC GCGATGCGCT CTTGAAGGCG
AGGGAGTCGC TGCAATCGTT CGTAGCGAAC CTGGAGTCGG GGGTGAATAT GGAGCTTCTG
CCCGTCGATC TGCGCGATGC GCTGGACGCG GTAGGGGAGG TTACCGGCGA GACTACGGCG
GACGACGTAC TGGACCGGAT TTTCTCCAGC TTCTGTATTG GGAAGTAG
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| Protein sequence | MYVRDTIAAI STPVGEGGIG IVRISGPAAL QIARSIFNAK SNGGLKSHRF SYGEVVQPGT
GDLVDEAMAV YMKAPNSYTR EDVVEIQCHG GTLVVSRILA LVISQGSRPA EPGEFTKRAF
LNGRIDLVQA EAVMDVISSR TDASLALAQH QREGLLSQRI STVKEGIVYA LAYVEALIDF
PEDDVNVAVE TDVLGKVAPA LAELDALIAG FDEGRVLRDG VSVVIAGKPN VGKSSLLNTL
LKEKRAIVTS VPGTTRDLIE EVVNINGLPV KLLDTAGIRE SEDQVEQEGV RLSLDRIPKA
DLVLFVIDGS SAFGDEDAAI LEAIGSKSCI VVRNKSDLPL AVDLPSGCSA PVVAISTHTG
DGVPQLRDAI TNAFMHGHAI DGREFVALSK ARHRDALLKA RESLQSFVAN LESGVNMELL
PVDLRDALDA VGEVTGETTA DDVLDRIFSS FCIGK
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