| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gbem_4000 |
|---|
| Symbol | |
|---|
| ID | 6780864 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter bemidjiensis Bem |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011146 |
|---|
| Strand | + |
|---|
| Start bp | 4538511 |
|---|
| End bp | 4539869 |
|---|
| Gene Length | 1359 bp |
|---|
| Protein Length | 452 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 642769995 |
|---|
| Product | DNA repair protein RadA |
|---|
| Protein accession | YP_002140788 |
|---|
| Protein GI | 197120361 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG1066] Predicted ATP-dependent serine protease |
|---|
| TIGRFAM ID | [TIGR00416] DNA repair protein RadA |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.00000405173 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCCAAGG TAAAAGTAAA GACGGGGTTC GTTTGCTCCG ATTGCGGCGC GGACTATCCG
AAGTGGCAAG GGCACTGCAC GGCCTGCGAC GCCTGGAGCA CCATCAAAGA GGTCAGGCTC
GGATCCGAGA GAGCCGCGCG GCGCGATGGT TTCGCCGGAG CCACCTCGTC GGTCACCCTC
CTTTCCCAGG TCGAATGCAC CGAACAGTCC CGCTTTTCCA GCGGCAGCGA AGAGTTCGAC
CGGGTGCTCG GCGGGGGCTT CGTCCCCGGC TCCGTCATCC TGATCGGGGG GGACCCGGGC
GCCGGGAAAA GCACCATCTT GCTGCAGACC ATGTGCTACG CGGCCGCCTC GAAGGAGGTG
CTCTACGTCT CGGGCGAGGA ATCGCTGCAG CAGATCGCCG GGCGCGCCAG AAGGCTGCAA
CTCCCCCTGG ACCGGGTGAA GATGCTGGCC GAGAGTTCGG TGGAAGGGGT ACTGGAGGCG
GCGAAAAGCG AGCGCCCCGA AGTGGTGGTA ATCGACTCGA TCCAGGTGAT GCAGTCGGCA
GCGCTGGAAG CGGCGCCGGG AGGGGTTTCC CAGGTGCGCG AGTGCGCGGC GGCGCTCACC
TGCTACGCCA AGACCTCCGG AGTGGTGCTG ATCATGGTCG GGCACGTCAC CAAGGACCAG
TCCCTGGCCG GCCCCATGAC CCTCTCCCAC ATGGTCGACA CCCAGGTGAT GCTCTCCTCC
ACCGAGGACT CGCGCTACCG CTTGATGCGC ACCACCAAGA ACCGCTTCGG CCCGGTCAAC
GAATTGGGCG TCTTCGCCAT GACCGAGGCG GGGCTGCGCG AGGTGAAAAA TCCTTCGGCG
ATCTTCCTCT CCCGCAGCGA GAAGGCCGCG CCCGGCAGCC TGATCAGCGT CCTTTGGGAA
GGGACCAGGC CGCTTCTGGT CGAGATCCAG TCCCTGGTAG TGGGGGCGCA GTACGGCTCG
CCGCGCAGGC TGGGAATAGG GCTCGATCAA AACCGCATCG CCATGATCCT CGCCGTCATC
ACCAAGCACG GGGGGCTGGT GCTCTCGGAC CAGGACGTCT TCGTGAACGT CGTGGGGGGA
ATAAGGGTAT TGGAAACCAG CGCCGACCTC GCGGTGGCCC TGGCCATCGT TTCCAGCTTC
CGCAACACGG TGCTCCCCCA GGACCTGCTG GTGTTCGGCG AGGTGGGGCT CTCGGGCGAG
ATCCGCCCGG TCTCCAACGG GGAAATGCGG CTCAAGGAAG GGGTGAAACA TGGCTTCACC
CGCGCCATCG TGCCCAAGGG AAACGCGCCG AGAAAGGGGA TCCCTGGGTT GGAGGTGGTG
GCGGTCACTT CGCTCCCCGA GGCGCTTGAG GCAATTTAA
|
|---|
| Protein sequence | MAKVKVKTGF VCSDCGADYP KWQGHCTACD AWSTIKEVRL GSERAARRDG FAGATSSVTL
LSQVECTEQS RFSSGSEEFD RVLGGGFVPG SVILIGGDPG AGKSTILLQT MCYAAASKEV
LYVSGEESLQ QIAGRARRLQ LPLDRVKMLA ESSVEGVLEA AKSERPEVVV IDSIQVMQSA
ALEAAPGGVS QVRECAAALT CYAKTSGVVL IMVGHVTKDQ SLAGPMTLSH MVDTQVMLSS
TEDSRYRLMR TTKNRFGPVN ELGVFAMTEA GLREVKNPSA IFLSRSEKAA PGSLISVLWE
GTRPLLVEIQ SLVVGAQYGS PRRLGIGLDQ NRIAMILAVI TKHGGLVLSD QDVFVNVVGG
IRVLETSADL AVALAIVSSF RNTVLPQDLL VFGEVGLSGE IRPVSNGEMR LKEGVKHGFT
RAIVPKGNAP RKGIPGLEVV AVTSLPEALE AI
|
|---|
| |