| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gbem_3709 |
|---|
| Symbol | prfA |
|---|
| ID | 6780573 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter bemidjiensis Bem |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011146 |
|---|
| Strand | - |
|---|
| Start bp | 4233838 |
|---|
| End bp | 4234917 |
|---|
| Gene Length | 1080 bp |
|---|
| Protein Length | 359 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 642769704 |
|---|
| Product | peptide chain release factor 1 |
|---|
| Protein accession | YP_002140497 |
|---|
| Protein GI | 197120070 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0216] Protein chain release factor A |
|---|
| TIGRFAM ID | [TIGR00019] peptide chain release factor 1 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.231674 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCCATGT TTGAAAAGAT AGCCGAGCTG GAAAGACGTT TCGAAGAGCT GGAATCGCTC
CTGTCGGACC CCGAGGTGCT GGGGAACCAG ACCGAGTTCA GAAAGCTCTC CAAGGAGCAT
TCCGGGCTTG CCGAGCTGGT TGCCGCCTAC CGCGAATACA AGAAGATACT TTCCGACATC
GACGACAACA AGGAACTCCT GAAGGAGCCG GACCAGGAGA TGCGCGAGAT GGCCCAGGCC
GAGCTTTTGT CCCTGGAGGC GCGGCGCGAG GTGCTTGAAG GCGAGATCAA GTTGCTGCTC
CTGCCCAAGG ACCCCAACGA CGACAAGAAC GTCGTGCTCG AGATCCGCGC CGGAACCGGC
GGGGACGAGT CCGCCCTCTT CGCCGGGGAC CTGTTCCGCA TGTACTCCCG CTTCGCCGAG
ACCAACCGTT GGCGCGTCGA GATCATCTCC GCCTCCGAGT CGGAGAAGGG TGGCTTCAAG
GAGGTGATCG CGCTGGTCGA GGGGACCGGG GTCTTCGCCA AGCTGAAGTA CGAGTCGGGG
ACCCACCGCG TGCAGCGCGT CCCCGAGACC GAGGCGCAGG GGCGGATTCA CACCAGTGCC
TGCACCGTCG CGGTCATGCC CGAGGCTGAG GACGTCGACA TCGACATCAA CCCTGCCGAT
CTGAAGATCG ACGTCTACCG TTCCTCCGGC GCCGGCGGGC AGCACGTCAA CACCACCGAC
TCAGCGGTCA GGATCACCCA TCTTCCCACC GGTACCGTGG TGGCCTGCCA GGAAGAGCGC
AGCCAGATCA AGAACCGCGC GAAAGCCATG AAAGTATTGA AGTCCAGGAT CCTGGACAAC
ATCGTCATGG AGCAGAACGC GAAGCTCGCC GCCGATCGCA AGAGCCAGGT GGGAAGCGGG
GACCGCAGCG AGCGCATCAG GACCTACAAC TTCCCGCAAG GAAGGATGAC CGACCACAGG
ATCGGCCTGA CCCTGTACCG TCTGGACGCC ATCATGGCCG GCGACATCGC CGAGATCGCC
GACTCCCTGC GCCAGCACTA CCAGATGGAA GCGCTGCAGG CACAGAGCGA GGGGATGTAA
|
|---|
| Protein sequence | MSMFEKIAEL ERRFEELESL LSDPEVLGNQ TEFRKLSKEH SGLAELVAAY REYKKILSDI
DDNKELLKEP DQEMREMAQA ELLSLEARRE VLEGEIKLLL LPKDPNDDKN VVLEIRAGTG
GDESALFAGD LFRMYSRFAE TNRWRVEIIS ASESEKGGFK EVIALVEGTG VFAKLKYESG
THRVQRVPET EAQGRIHTSA CTVAVMPEAE DVDIDINPAD LKIDVYRSSG AGGQHVNTTD
SAVRITHLPT GTVVACQEER SQIKNRAKAM KVLKSRILDN IVMEQNAKLA ADRKSQVGSG
DRSERIRTYN FPQGRMTDHR IGLTLYRLDA IMAGDIAEIA DSLRQHYQME ALQAQSEGM
|
|---|
| |