| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gbem_3523 |
|---|
| Symbol | |
|---|
| ID | 6780386 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter bemidjiensis Bem |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011146 |
|---|
| Strand | + |
|---|
| Start bp | 4032518 |
|---|
| End bp | 4035685 |
|---|
| Gene Length | 3168 bp |
|---|
| Protein Length | 1055 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 642769518 |
|---|
| Product | transcriptional activator domain |
|---|
| Protein accession | YP_002140312 |
|---|
| Protein GI | 197119885 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG2909] ATP-dependent transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCGAGAC ACAAGATAAC CGCTCCCGGT CTTGCTGCCG GCATCGTACA TAGAGAAAGG
CTGTTCCAGG TTTTGGACCA TGCCGATAAA CCTGTGCGCT GGATTTCCGG TCCCGGCGGC
TCCGGCAAGA CCACCCTGGT CTCCAGCTAC CTCGAAACCC GCGGCATCCC AGCCCTGTGG
TACCAGGCAG ACCAAAGCGA CTCCGACCCG GCCACCTTCT TCTATTACAT GGGTCTGGCG
TTTCAGGACT CTGTTTCACC CGACCGCGAA CCGCTGCCAC TTCTCACCCC CGAATACCTT
GCCGGCCTCA AGACCTTCTC TCGCCGTTAC TTCCAACAAC TCTTCGCACA ACTGCCGGCA
CCTTACGCCA TAGTCATTGA TAACTACCAG GAGATCCCGG CTGGTTCCCC GTTTCACGAA
CTGATAGCGG AGGGACTGGC GCAATGTCCG GACGGGATCA CCGTGATAGC CACAAGCAGG
GAAGAGCCGC CTGCGGTGTT GACCGTGAAC GAAACAGCGG CACGTTTCGC TTTCCTCGGC
TGGAGCGACC TCCGGTTTTC CTTCGACGAG GCCAGGGAGT TCGCCGGGAC ACAGACTTCA
AGCCACATTG AGACCGAAGC GCTGGCGAGC CTTTACGCCA AGACGGACGG GTGGATAGCC
GGGCTGCTCC TGATCCTGGA GAGCCTCGAC GGCGGCACCC TCGACCAAAA GCTGCTGCAA
GAACTTCCTC TCGACAAGGT GTTCGTGTAC TTCGCCGACA AGATCTTCGA AGCGCGAGAC
GGCGAGCTGC AAAACTTCCT GCTGAAGACC GCTCTGGTCC CGGGAATCAC GGCGCAGATG
GCCGAGCGTT TGACCGGCAT CGGCAGTTCC GAGCAGATCC TCTCCCGGCT CTGCCGCAAC
CGTTTCTTTA CCGCGAAGTC CTCGCCGGCA GACCCCGTCT ACCAGTACCA TCCACTTTTC
AGAGAGTTCC TCGTTGCGCG TGCGGAGGGA ACCCTTCCTG CCGCCGAGCT GAGGGAAATC
AGGCGGCAGG CCGCCTCCCT GCTTAAGGGC GCGGATCGAG CCGAGGACGC GGCAGGCCTG
CTCACCGAGG CTTCGGACTG GGACGGCGTT GCGGAGCTGA TCCTCGATTG CGCGCCGCTG
CTTGCTGCGG AAGGAAGAAG CGAGACGGTT CGTGGCTGGC TTGAGAGCGT ACCTGCCGAG
AGCGTGGCAG TAAACCCAGG CCTGCTCTAC TGGAAAGGGG TATGCCTGCT GCTTCATTCG
CCTCCTGCAA GCAGGGTCTG TTTCCGTGAG GCCTACGATC TATACCGCCT GGCCGACGAC
CGGGTCGGCA TGCTCCTCTC CTGGTCCGGC GGCGCGGAAG CATCGCTTTA CGACAGGGAG
TTCACCCCGC TGGACCAGTG GCTCGCCCTG CTGGAAGAGA TGCGGATCGA GGAAGGGGAC
ATTCCCTCGC GACAGCTTGA GGAGCAGATG GCCATGAGCA TCTTCAACGC CATGGCTTTC
AGGCAGCCGC ACCACCGCGA CATCTCCAAG TGGCGCGAGC GCGCCCTTTC CCTGGTGCGC
GGCTGCGCCG ACATCAACCT GCGTCTGCAG TCGGCAATCC ATCTGGTCGT CCACGATCTC
TGGAACGGGA ACTTCGGCAG GGCGAGCGTA CTGCTGGAGC AGACCTTGGC AATGGCCAGC
ACGGGCAAGC CCTCCCCGAT GACCCGGATC ACCATAATGA ATGCGCAGGT GCTCAACTGC
TATTTCACCG GGGCATGGGC TTCGGGGGTC GCGGTCGCCT TCGATGCACT GAGGATGGCG
GACGAGACGG GGGTCCACGT CTGGGACATC CAACTCATGG GAAACGGCGC CGGCTGCGCG
CTTTGCAGGG GAGACTCCGC CACGGCGGAT GAGCTGCTGA ACGCGATGCG CGACCGGTTG
CAATGGGGCG TAAGGCTCGA TATCGGCCAA TACCATGGGC TGCGTGGATG GCAGGAGAGT
CTGGCAAGAC GTTTCCAGGC AGCGATCCCG CACCTGGAAC TCTCCTTGGA ATCCCTCCAG
GGGACGGGTT TCCTGGCGCC GGAAGCGGTG ATGCTCATAA CCCTGGCCGA CAACCTCCGG
ATGACCGGAA ATCCGACCCG GGCAGAGGCA TGCCTTAGCC GTGCCTGTGA CATCGCCCGC
GGTATGGGGA GCGGGTACCT TGAGTTCCTT TGCCTTCTGA ACAGCGCCGA ACTTGCGCTG
GATGCTGAAG ACGACGTGCA GGGCGATATG CTGCTGCGCC GGGCGATGGC CCTTGGCAGT
GCCGGAGGGT ACCTGAACGG CTGGTGCTGG CGCCCCGATG CCCTGGTGCG GCTATGCACC
AAGGCATTGG AGAACGACGT AGAGGCTGCT TACGTAACCC GGCTGGTGCG CCATTGGGCG
CTGGCGCCGG AGACGCCGCC GCAGCATCTG GACAACTGGC CCTGGCAGTT CCAGATCCTC
ACCCTGGGGG GCTTTCAGCT GATCCGGGGA AACGAGCCCC TGATCCTTGC CGGTAAATCG
CGAAAGCCGC TGGAACTGTT GAAAGCTCTG GTGGCCTTCG GCGGCAGCAA CGTGCCCCTG
GAGCGGCTTA CCGATGCGCT TTGGCCCGAA ACCGACGGCG ACCTGGCCCA GCGCTCCTTC
GACACGACCC TGCATCGGCT CCGAAAGTTG CTGGCAGATG AAAAGGTACT CCAACTCCAG
GCGGGAAAGC TTTCCATCAA CCCCAGGTAC TGCTGGATCG ACACCTGGGC CTTCGAGCGC
CGATGCGGCG AGATAGATGC CGCATTGAAC CTCCCTCTTG CTTTCGAGAA AGGTGCGGCC
CTGTACCAGG GAAGCTTCCT CCTCGACGAT GCATCCCTGG CCTGGACCGC ACCGATGCGG
GACCAGATGC GCAACCGGCT GCGCCAACTA GTCGGCAGGG CGGGGGGATA TTTCGAGGGA
CTTGAGCGAT GGGATCTGGC TGTCACCTGG TACGACAAAG GGATAAAGCT CGATCCGGTT
GCCGAAGAAT TGCACCAAAG GCTCATGGTC TGCTACCGGC AGCAGGGACA GATGTCGCTG
GCGATCAAGA CCTATCTCAA CTGCCGCTCG ATGCTCTCCA CCGAACTTGG GATAGCACCC
TCGGCGCACA CTGAAGAGAT ATATCGAAGC TTGACCGTAG GCCAGTAG
|
|---|
| Protein sequence | MARHKITAPG LAAGIVHRER LFQVLDHADK PVRWISGPGG SGKTTLVSSY LETRGIPALW
YQADQSDSDP ATFFYYMGLA FQDSVSPDRE PLPLLTPEYL AGLKTFSRRY FQQLFAQLPA
PYAIVIDNYQ EIPAGSPFHE LIAEGLAQCP DGITVIATSR EEPPAVLTVN ETAARFAFLG
WSDLRFSFDE AREFAGTQTS SHIETEALAS LYAKTDGWIA GLLLILESLD GGTLDQKLLQ
ELPLDKVFVY FADKIFEARD GELQNFLLKT ALVPGITAQM AERLTGIGSS EQILSRLCRN
RFFTAKSSPA DPVYQYHPLF REFLVARAEG TLPAAELREI RRQAASLLKG ADRAEDAAGL
LTEASDWDGV AELILDCAPL LAAEGRSETV RGWLESVPAE SVAVNPGLLY WKGVCLLLHS
PPASRVCFRE AYDLYRLADD RVGMLLSWSG GAEASLYDRE FTPLDQWLAL LEEMRIEEGD
IPSRQLEEQM AMSIFNAMAF RQPHHRDISK WRERALSLVR GCADINLRLQ SAIHLVVHDL
WNGNFGRASV LLEQTLAMAS TGKPSPMTRI TIMNAQVLNC YFTGAWASGV AVAFDALRMA
DETGVHVWDI QLMGNGAGCA LCRGDSATAD ELLNAMRDRL QWGVRLDIGQ YHGLRGWQES
LARRFQAAIP HLELSLESLQ GTGFLAPEAV MLITLADNLR MTGNPTRAEA CLSRACDIAR
GMGSGYLEFL CLLNSAELAL DAEDDVQGDM LLRRAMALGS AGGYLNGWCW RPDALVRLCT
KALENDVEAA YVTRLVRHWA LAPETPPQHL DNWPWQFQIL TLGGFQLIRG NEPLILAGKS
RKPLELLKAL VAFGGSNVPL ERLTDALWPE TDGDLAQRSF DTTLHRLRKL LADEKVLQLQ
AGKLSINPRY CWIDTWAFER RCGEIDAALN LPLAFEKGAA LYQGSFLLDD ASLAWTAPMR
DQMRNRLRQL VGRAGGYFEG LERWDLAVTW YDKGIKLDPV AEELHQRLMV CYRQQGQMSL
AIKTYLNCRS MLSTELGIAP SAHTEEIYRS LTVGQ
|
|---|
| |