| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gbem_3446 |
|---|
| Symbol | |
|---|
| ID | 6780308 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter bemidjiensis Bem |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011146 |
|---|
| Strand | - |
|---|
| Start bp | 3958284 |
|---|
| End bp | 3959618 |
|---|
| Gene Length | 1335 bp |
|---|
| Protein Length | 444 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 642769440 |
|---|
| Product | polysaccharide biosynthesis protein |
|---|
| Protein accession | YP_002140235 |
|---|
| Protein GI | 197119808 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2244] Membrane protein involved in the export of O-antigen and teichoic acid |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.823308 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATCAGG GATGGGTCAG CTATCTTCCG GCGTTCCTCA AGAAGCGGGT CGAGGGAAGG
CAGGAACTTC AGAAAGTACT CAACAACACC GGCTGGCTCT TTGGTGACCG CCTGCTCCGC
ATGGGGGTGG GGCTATTCGT CGGTATCTGG ATCGCCCGCT ATCTCGGCCC CGCACAGTAT
GGATTGCTGA GTTATGCTGC GTCTTTGGTT GCCGTATTTT CGGCGATAGC GATTCTGGGT
CTGGAAGGTG TTGTCATCCG CGAGGTGGTG CGGTCCCCGG AGAGAGAACA GGAAATTCTC
GGTACGGTCT TCACGCTGCG CTTGGCTGCT GGTCTTTTTG CTTACCTTCT CACTATGGTG
ACCGTATTCC TGCTTCGTCC GACCGACCAT CTCACTCAGA TGCTTGTCGG AATAATGGGA
TCGGTATTGG TGTTCGGGGC CTTTGACACA ATCGATTTGT GGTTCCAGTC AAAAGTTCTG
TCCAGATACG TGGTCTATGC GAAGAATGCT GCGTTCATAC TTGTTTCTGC ACTGCGACTT
GCCCTGGTAT TGCTAAAAGC TCCGTTGTGG ACTTTCGCGG CGGCAAACGC TGCCGAAATC
GGTCTTGGAG CCGTAGGGCT TGTCTATGTT TACCGGGCCA ATAGCCAGCG CCTCGGCAGT
TGGCGAATAA CGCTCGATCG CGCTCGCAAC TTATTGGCAG CCAGCTGGCC TTTGGTCCTT
TCAGGGATCG TGTTCATGGT TTATCTTCGC ATCGACCAGA TCATGCTTGG GCAGATGGCT
GATGCGCATG AAGTCGGGGT TTACGCATCG GCCGTAAAGA TCGCAGAGAT ATGGTTCTTC
ATACCGACAG CCATTGTCTC TTCCGTTTTC CCCAACATCG TCAAGGCAAA GGAAAACGAT
GAAGCTGAAT TTTATGGAAG GTTGCAGAAA GTTTACAACT TGCTTGCTTT CCTGGGGTAT
GCCGTTGCCA TTCCTACTAC ATTTCTGGCG GGTATCGTTG TCTTTCTTTT TTACGGCGAA
GCGTATGCCT CGGCTGCTCC TATGCTGGTA TTGCTGATCT GGAGCGATCT TTTTGCCAAC
CTCGCTGTGG CCAGAAATGC TTTTCTGATG GCAATGAATT GGACCCGAGT TCTTCTGCTG
ATGGTATCAG TGGGGGCATT TGTGAATATA GTTTTGAATT ATGTGCTCGT GCCGAAATAT
GGCGGGGTTG GGGCAGCAGC GGCCTCTTTG ATCTCGTACT GGATCGCCGG CCACGGAGCC
TGTTTTCTTT ATAAGCCGCT GCACAGGACT GGTGCCATGT TAACCAGGGC ATTGATATAC
CCGAGGTTTT GGTAG
|
|---|
| Protein sequence | MNQGWVSYLP AFLKKRVEGR QELQKVLNNT GWLFGDRLLR MGVGLFVGIW IARYLGPAQY
GLLSYAASLV AVFSAIAILG LEGVVIREVV RSPEREQEIL GTVFTLRLAA GLFAYLLTMV
TVFLLRPTDH LTQMLVGIMG SVLVFGAFDT IDLWFQSKVL SRYVVYAKNA AFILVSALRL
ALVLLKAPLW TFAAANAAEI GLGAVGLVYV YRANSQRLGS WRITLDRARN LLAASWPLVL
SGIVFMVYLR IDQIMLGQMA DAHEVGVYAS AVKIAEIWFF IPTAIVSSVF PNIVKAKEND
EAEFYGRLQK VYNLLAFLGY AVAIPTTFLA GIVVFLFYGE AYASAAPMLV LLIWSDLFAN
LAVARNAFLM AMNWTRVLLL MVSVGAFVNI VLNYVLVPKY GGVGAAAASL ISYWIAGHGA
CFLYKPLHRT GAMLTRALIY PRFW
|
|---|
| |