| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gbem_3407 |
|---|
| Symbol | |
|---|
| ID | 6780269 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter bemidjiensis Bem |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011146 |
|---|
| Strand | + |
|---|
| Start bp | 3923707 |
|---|
| End bp | 3924882 |
|---|
| Gene Length | 1176 bp |
|---|
| Protein Length | 391 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 642769401 |
|---|
| Product | permease YjgP/YjgQ family protein |
|---|
| Protein accession | YP_002140196 |
|---|
| Protein GI | 197119769 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0795] Predicted permeases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.134453 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCGAACT TCATGAAAAA GACCCTGTAC GCTTACATCT TCAAGGAAAT CCCCACCCCT
TTCCTGGTCG GCATGGTGAC CTTCACCTTC GTGCTCCTCA TGGGACGCTT TCTCAAGCTC
GCCGAGATGG TGGTAGAGAA AGGGATCCCC TTCAGCGACG TGGTGCGGAT GGTGGCCTAT
CTACTCCCCC CTTTCTGGCT CTTCACCATA CCGATGGCGC TTTTGCTCGC CATGCTGCTT
GCCTTCGGCC GCCTTTCCGG CGACAGCGAA ATCACCGCCA TGAAGAGTTG CGGCATCAGT
CTCTACGGGC TACTCCCCCC CCCAATGCTA TTCGCCGCCT GCGCCACCCT CGCCTGTCTG
TGGGTCACCG TTTACGCCGT TCCCTGGGGG AACTCCGGCT TCAAGAAGCT GATGGTGGAG
ATTGCCCAGA GCAGCGCCGG GATCGCCATC AAAGAGAAGA TCTTCAACAA CGCCTTCCCC
GGCATGGTGG TCTACACGCA ATCACTAGAC ACCAAGGCGC AGACCATGGG GGGAGTTATC
GTCCACGACG AGAGGGACCC GCGCACCCCG ACCACCATCT TCGCTTCCAC CGGCGCCCTG
GTATCCGACC CGAAAAGCAA CTCAATGGAG TTCCAGTTGC GCAACGGCTC CATCCACCGT
GCCGAAGAGC AGGGGGGGTA CCGGATGGTG CAGTTCCAGG AATACAACCT CCGGGTCGCG
CTCGCCGACG GCAGCAACAA GGCGACCAGG AAAGTGAGCG AGATGACGCT CGACGAGTTG
CTCCACCCTC CCAAGGGAAC GCAGCAAAAG GAGATCATCT CCAGGGACCT CGAATACCAC
AGCCGCCTGG CACTCCCGTT CTCCTGTTTC GTCTTTACGC TTTTGGCCAT ACCGCTGGGG
ATCCAGAACC GGCGCTCGGG GAAGGCTGCC GGGTTCTCTT TGAGCATCGG CGTCATCCTC
CTTTACTACG TAACCCTCTC CGCCTTCGAT ACGCTGGGCG AGCGGGGCAC GCTGCCGCCG
CTGCTTGCCG GGTGGAGCCC GAACTTGATC TTCCTTCTGG CTGGGGCCTA CCTGTTCAAG
AAGACCTCCG ACGAGGAGCG TCTCCCCATC TTCTCTCTTT ACCCGCGCCT CAAGGAGGCG
TTGCGGGGAC GCCTTAGCAA GGGGAGGAAG CGATGA
|
|---|
| Protein sequence | MPNFMKKTLY AYIFKEIPTP FLVGMVTFTF VLLMGRFLKL AEMVVEKGIP FSDVVRMVAY
LLPPFWLFTI PMALLLAMLL AFGRLSGDSE ITAMKSCGIS LYGLLPPPML FAACATLACL
WVTVYAVPWG NSGFKKLMVE IAQSSAGIAI KEKIFNNAFP GMVVYTQSLD TKAQTMGGVI
VHDERDPRTP TTIFASTGAL VSDPKSNSME FQLRNGSIHR AEEQGGYRMV QFQEYNLRVA
LADGSNKATR KVSEMTLDEL LHPPKGTQQK EIISRDLEYH SRLALPFSCF VFTLLAIPLG
IQNRRSGKAA GFSLSIGVIL LYYVTLSAFD TLGERGTLPP LLAGWSPNLI FLLAGAYLFK
KTSDEERLPI FSLYPRLKEA LRGRLSKGRK R
|
|---|
| |