| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gbem_3394 |
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| Symbol | |
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| ID | 6780257 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Geobacter bemidjiensis Bem |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011146 |
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| Strand | + |
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| Start bp | 3909120 |
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| End bp | 3910550 |
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| Gene Length | 1431 bp |
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| Protein Length | 476 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 642769390 |
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| Product | protease Do |
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| Protein accession | YP_002140185 |
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| Protein GI | 197119758 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain |
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| TIGRFAM ID | [TIGR02037] periplasmic serine protease, Do/DeqQ family |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.0792545 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAAGCA TCAGACTCCT CGCTGTCTGC CTTATTGTCT GCACGTTAAT GATAGCCTGC
AAGAAAAAGG AGCAGGCATC CTTCTACGAA TCCGAGCGAA AGGAGAGCGT CCCGGCCCCG
GTCCAGGAGG TCCCCAAGGA CATCCTGGTG ACGCAACAGG CCTTCACCAC GCTGGTCAAG
ACCGTGACCC CCTCCGTCGT CAACATCTCC ACCATCGGCA AGAAAAAGCT GGTCCGCCCC
TTCTTCGAGT CGTCACCTTT CTTCGACGAG TTCTTCGGCG AAAACGCACG CCCGCAGTAT
CGAAGGGAAC ATAGCTTAGG CTCCGGCTTC ATCCTGAACA AGGAAGGGTA TATCGTCACC
AACGACCACG TGGTGCGGGA CGCCGAGACC ATACAGGTGA AGCTTTCCAA CGAAAGCGTC
TACAAGGGGA AGGTGATCGG CTCGGACCCG AAGACGGACA TCGCGGTGAT AAAGATCGAC
GCCAAAGAGC CGCTGCCTGC AGCGGTCCTC GGGGATTCCA ACAAGCTGCA GGTCGGGCAG
TGGGCCGTCG CCATCGGGAA CCCCTTTGGC CTGGACCGCA CCGTCACCGT CGGCGTTGTC
TCGGCAACCG GCAGGTCGAA CATGGGGATC GAGACCTACG AGGATTTCAT ACAGACCGAC
GCCTCCATCA ACCCCGGAAA CTCCGGCGGA CCGCTGCTTA ACATCTACGG CGAGGTGATC
GGAATCAACA CAGCCATCGT CGCCGCCGGA CAGGGAATCG GCTTCGCCAT CCCGGTAAAC
ATGGCAAAGC AGGTGGTGAC GCAGTTGATC AGCAAGGGGA ACGTAAGCCG CGGCTGGCTC
GGCGTCTCGA TCCAGTCGGT GACCGAAGAG ATGGCAAACT CCTTCGGGCT TCCCAAAGCG
TACGGCGCGC TGGTGAACGA CGTCGTTCCA GGGGGGCCGG CTGCGAAGGC CGGCGTCATG
CAGGGGGACG TAATCACGAG CTTTGCCGGG ACGGCCGTAA AGGACGTGCG CCAGTTGCAG
CGCCTGGTCG GCGAAACACC CATCGGCAAG AAAGTTCCGG TGGAGCTCTA TCGCGACGGC
AAGAAGATCA ACGTCCAGAT AACCACTGCA CCTGCCGACA GCGCCCAGGC ACAGACACAA
AGACCTGCCG AGCGGGAAGC GGGAGCCCTG GGGCTCTCGG TCGAGGAACT GGGAGCGGAG
ATGCGTTCCC GCGGCGTCAC CGGCGTGGTG GTGAGCGACC TCGAACCGGG CGGGATCGCG
GAAGAAAGCG GCATCCAGCG CGGCGACATC ATCGTATCCG TGAACCAGAA GAAAGTGAGA
AATCTGGCCG AGTACCAGAA GGCAATGGCG GACGCCGGCA AACGCGGCGC CGTCGCGCTC
CTAGTCCGGA GAGGCTCGGC CAGCATCTAC TTCGCCCTAA AATTAAGATA G
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| Protein sequence | MKSIRLLAVC LIVCTLMIAC KKKEQASFYE SERKESVPAP VQEVPKDILV TQQAFTTLVK
TVTPSVVNIS TIGKKKLVRP FFESSPFFDE FFGENARPQY RREHSLGSGF ILNKEGYIVT
NDHVVRDAET IQVKLSNESV YKGKVIGSDP KTDIAVIKID AKEPLPAAVL GDSNKLQVGQ
WAVAIGNPFG LDRTVTVGVV SATGRSNMGI ETYEDFIQTD ASINPGNSGG PLLNIYGEVI
GINTAIVAAG QGIGFAIPVN MAKQVVTQLI SKGNVSRGWL GVSIQSVTEE MANSFGLPKA
YGALVNDVVP GGPAAKAGVM QGDVITSFAG TAVKDVRQLQ RLVGETPIGK KVPVELYRDG
KKINVQITTA PADSAQAQTQ RPAEREAGAL GLSVEELGAE MRSRGVTGVV VSDLEPGGIA
EESGIQRGDI IVSVNQKKVR NLAEYQKAMA DAGKRGAVAL LVRRGSASIY FALKLR
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