| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gbem_3362 |
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| Symbol | |
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| ID | 6780220 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Geobacter bemidjiensis Bem |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011146 |
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| Strand | + |
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| Start bp | 3864605 |
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| End bp | 3866512 |
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| Gene Length | 1908 bp |
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| Protein Length | 635 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 642769353 |
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| Product | 1-deoxy-D-xylulose-5-phosphate synthase |
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| Protein accession | YP_002140153 |
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| Protein GI | 197119726 |
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| COG category | [H] Coenzyme transport and metabolism
[I] Lipid transport and metabolism |
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| COG ID | [COG1154] Deoxyxylulose-5-phosphate synthase |
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| TIGRFAM ID | [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTACAAAC TGCTAAGCAA GATCAACGGT CCCGACGACC TGAAGAAGCT TGATGCCGAG
GAACTGACTC CCCTTGCCGA AGAAGTGCGC GCCTTTCTCC TGGAGACGGT GACAAGGACC
GGCGGACACC TCGCCTCCAA CCTCGGAGCG GTCGAGCTGA CCATCGCGCT GCACTACTGC
TTCGATTCCC CCAAGGACAA GATCATCTGG GACGTCGGGC ACCAGGCCTA CACCCACAAG
ATCCTCACCG GTCGCCGCGA CAGCTTCCAC ACCCAGCGCT GCTACAAGGG GATCAGCGGC
TTTCCCAAGC GCGCGGAATC CCCCCACGAC GCCTTCGGCG TAGGTCACTC CTCCACCTCC
ATCTCCGCCG GGCTCGGCAT GGCGGTAGCG CAGGGGCTCA AGGAGGATGC GGCCCGCGTC
ATCTCCGTCA TCGGCGACGG CTCCCTTACC GGCGGCATGG CCTTCGAGGC GTTGAACCAG
GCGGGTCATC TCAAGAAAAA CCTGATAGTG GTCTTGAACG ACAACGAGAT GTCCATCTCC
AAAAACGTCG GCGCCCTCTC CTCCTTCATC TCGCGCAAGA TGACCGGCGG CTATTACCGC
AGCCTCAAGA AGGAGATGGA GGCGCTCATG GCCAACATCC CTGCCATCGG CGGCAACATC
CTGCACTTCG CGAAGAAGGC GGAGAACTCG CTCAAGGGTT TCCTCACCCC CGGCACCCTC
TTCGAGGGTC TCGGCTTCGA GTACGTCGGC CCCATCGCCG GGCACGACCT CCCCACCCTC
CTGGGTGTGC TGGAAAACGT AAAACGGCTC GAAGGGCCGA TCCTTTTGCA CGTGATGACC
AAGAAGGGAA AGGGCTACCC GCCCGCCGAG ACCATGCCGG ACAAGTTCCA CGGTGTGGCG
CCCACCAAGC CGGCGAGCGC CTCCCCGGCC AAGCTCCCCC CTCCTTCCTA CACCAGCGTC
TTCGGCAACA CCATGGTGAA GCTGGGCGAG ATAGACCCGA AGATACTGGC GATCACCGCC
GCCATGCCCG ACGGCACCGG CTTGACGCCG TTCGCCGAGC GCTTCCCGGA CCGTTTCTTC
GACGTGGGAA TAGCCGAGCA GCACGCGCTC ACCTTCGCGG CGGGGCTCGC CGTAGAAGGG
TTCCGCCCGG TCGCCGCCAT CTACTCCACC TTTACCCAGC GTGCTTACGA CCAGATCTTC
CACGACGTCT GCCTGCAGAA GCTGCCGGTC ACCCTCGCGC TCGACCGCGC AGGCCTCGTC
GGCGACGACG GCCCGACGCA CCACGGCAGC TTCGACATCT CGTATCTCCG GCACCTCCCC
GAGCTGACCG TAATGGCGCC CAAAGACGAG AACGAACTGC AGCACATGCT GAAGACCGCC
CTTTACTCGG GGCGTCCCAT CTCGCTGCGC TACCCGCGCG GCGCCGGTTT CGGCGTCCCC
CTGGACCATG AGCTGCAGGA GCTTCCCATC GGCAAGGGCG AACTCCTTAT CGATGGCGGC
GATCTCACCA TAGTCGCCAT AGGGTCCACC GTCCATCCGG CACTGGAGGC CGCGGCCCAG
CTAAGGCAGA AGGGAATCTT CGCCGCCGTG GTCAACGCGC GCTTCATAAA GCCGATCGAC
TCCGAGCTGA TCTTGGCCCA GGCCAAAAAG ACCGGCTGCC TCGTCACCGT CGAAGAGAAC
GCGCTTTTGG GCGGCTTCGG CAGCGCCGTG CTCGAACTCC TTTCCGACGC GGGATTGAAC
GCGGTCCGGA TCAAGAGGAT CGGCATACCC GACCGCTTCA TTGAGCAGGG GACCCAGGCA
CAGTTGAGGG CGGACCTTGG TCTCGATGCC GCCGGCATCG CCGCCACCTG CGAAACATTC
CTCAAAGGGG AGAGCGGAAC GTCTCCGCAG CTTGCCGTGG TCAAATAG
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| Protein sequence | MYKLLSKING PDDLKKLDAE ELTPLAEEVR AFLLETVTRT GGHLASNLGA VELTIALHYC
FDSPKDKIIW DVGHQAYTHK ILTGRRDSFH TQRCYKGISG FPKRAESPHD AFGVGHSSTS
ISAGLGMAVA QGLKEDAARV ISVIGDGSLT GGMAFEALNQ AGHLKKNLIV VLNDNEMSIS
KNVGALSSFI SRKMTGGYYR SLKKEMEALM ANIPAIGGNI LHFAKKAENS LKGFLTPGTL
FEGLGFEYVG PIAGHDLPTL LGVLENVKRL EGPILLHVMT KKGKGYPPAE TMPDKFHGVA
PTKPASASPA KLPPPSYTSV FGNTMVKLGE IDPKILAITA AMPDGTGLTP FAERFPDRFF
DVGIAEQHAL TFAAGLAVEG FRPVAAIYST FTQRAYDQIF HDVCLQKLPV TLALDRAGLV
GDDGPTHHGS FDISYLRHLP ELTVMAPKDE NELQHMLKTA LYSGRPISLR YPRGAGFGVP
LDHELQELPI GKGELLIDGG DLTIVAIGST VHPALEAAAQ LRQKGIFAAV VNARFIKPID
SELILAQAKK TGCLVTVEEN ALLGGFGSAV LELLSDAGLN AVRIKRIGIP DRFIEQGTQA
QLRADLGLDA AGIAATCETF LKGESGTSPQ LAVVK
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